Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1493
(772 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 36 0.032
U53141-8|AAA96110.3| 572|Caenorhabditis elegans Prion-like-(q/n... 35 0.074
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 34 0.098
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 33 0.17
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr... 32 0.39
Z98877-6|CAD56617.1| 432|Caenorhabditis elegans Hypothetical pr... 31 0.91
Z47068-6|CAA87334.2| 272|Caenorhabditis elegans Hypothetical pr... 31 0.91
U46675-3|AAB52643.1| 375|Caenorhabditis elegans Activated in bl... 31 1.2
U39993-3|AAK72060.1| 728|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z98877-4|CAB54473.2| 796|Caenorhabditis elegans Hypothetical pr... 30 1.6
U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical pr... 30 1.6
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 30 1.6
U64833-11|AAB04822.2| 615|Caenorhabditis elegans Hypothetical p... 30 2.1
AL021475-1|CAA16312.1| 758|Caenorhabditis elegans Hypothetical ... 30 2.1
Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical pr... 29 2.8
U39993-2|AAK72059.1| 744|Caenorhabditis elegans Hypothetical pr... 29 2.8
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr... 29 3.7
AF039719-10|AAB96751.2| 568|Caenorhabditis elegans Hypothetical... 29 3.7
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z69718-3|CAA93538.1| 365|Caenorhabditis elegans Hypothetical pr... 28 6.4
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 28 8.5
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical protein
F29G6.1 protein.
Length = 1170
Score = 35.9 bits (79), Expect = 0.032
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +3
Query: 69 CVPSSNVCLSRLQTSCPQHVCVNTTDCNSQAAMPVCDTDGRTHANPC 209
C+ +NV C +C+ PVCDT+G THAN C
Sbjct: 898 CLVENNVTTGDKLVKDYDGECCRIENCDISVFSPVCDTEGVTHANMC 944
Score = 31.9 bits (69), Expect = 0.52
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 129 CVNTTDCNSQAAMPVCDTDGRTHANPCH 212
C + +C + P+CD G TH N CH
Sbjct: 60 CCDKKECE-KVGTPICDNFGETHINDCH 86
Score = 31.5 bits (68), Expect = 0.69
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 141 TDCNSQAAMPVCDTDGRTHANPCH 212
T+C S + PVCD+ G TH N CH
Sbjct: 816 TNCPSDFS-PVCDSKGSTHQNICH 838
Score = 31.1 bits (67), Expect = 0.91
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +3
Query: 69 CVPSSNVCLSRLQTSCPQHVCVNTTDCNSQAA-----MPVCDTDGRTHANPCH 212
CV C+++ + ++ V+T +C + A+ PVCD+ GRTH + CH
Sbjct: 1042 CVYQQRRCMAQTISQKTLNI-VHTGECCALASCPKTGQPVCDSRGRTHDSLCH 1093
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = +3
Query: 105 QTSCPQHVCVNTTDCNSQAAMPVCDTDGRTHANPCHLVM---SGRKMGYWGP 251
Q + +C T C S+ PVCD TH N CH + RK+G P
Sbjct: 363 QFTLKDEICPRT--C-SRDVKPVCDEANNTHQNLCHFQQYNCNMRKLGIRSP 411
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 144 DCNSQAAMPVCDTDGRTHANPC 209
+C S A VCD++G+TH N C
Sbjct: 1023 ECESSGA--VCDSEGQTHMNHC 1042
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 168 PVCDTDGRTHANPC 209
PVCDT RTH N C
Sbjct: 263 PVCDTRNRTHKNVC 276
>U53141-8|AAA96110.3| 572|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 13
protein.
Length = 572
Score = 34.7 bits (76), Expect = 0.074
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +3
Query: 27 QSPCAGVTCPR-RHVCVPSSNVCLSRLQTSCPQHVCVNTTDCNSQAAMPVCDTDGRTHAN 203
QS C P C+ + N+C S Q SC Q C + T C QA +P C A
Sbjct: 382 QSSCPSACQPSCSQQCIQAQNLCQSACQPSC-QSSCGSNTQC-VQACIPSCQQTCGQQAQ 439
Query: 204 PCHLV 218
P +V
Sbjct: 440 PVIVV 444
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 34.3 bits (75), Expect = 0.098
Identities = 24/65 (36%), Positives = 29/65 (44%)
Frame = +3
Query: 27 QSPCAGVTCPRRHVCVPSSNVCLSRLQTSCPQHVCVNTTDCNSQAAMPVCDTDGRTHANP 206
Q C + C CVPS + S CPQ C N A M VC +DG T++N
Sbjct: 837 QLDCHSLRCFHGAKCVPSPS---SFPDCICPQS-C-NMNHLGIVANMTVCGSDGTTYSNL 891
Query: 207 CHLVM 221
C L M
Sbjct: 892 CELKM 896
Score = 33.5 bits (73), Expect = 0.17
Identities = 21/72 (29%), Positives = 30/72 (41%)
Frame = +3
Query: 18 FGVQSPCAGVTCPRRHVCVPSSNVCLSRLQTSCPQHVCVNTTDCNSQAAMPVCDTDGRTH 197
FG PC G CP C + R + C + +N+ VC TDG+T+
Sbjct: 290 FGRCDPCHGHKCPNGQTCQLGVD---RRPECKCSEQCTMNSAH--------VCGTDGKTY 338
Query: 198 ANPCHLVMSGRK 233
N C L ++ K
Sbjct: 339 LNECFLKLAACK 350
Score = 33.5 bits (73), Expect = 0.17
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 90 CLSRLQTSCPQHVCVNTTDCNSQAAMPVCDTDGRTHANPCHL 215
C +C C T CN + P+C +DG + N CHL
Sbjct: 668 CACYFGATCHNWACTCPT-CNLSSNYPICGSDGIVYNNQCHL 708
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +3
Query: 27 QSPCAGVTCPRRHVCVPSSNVCLSRLQTSCPQHVCVNTTDCNSQAAMPVCDTDGRTHANP 206
++PC + C CV + + + CP C N D S + PVC + G + +
Sbjct: 215 RNPCEDLRCGPGEDCVVNQINGILLAKCVCPTQ-CPNYGD--SVESSPVCSSHGVDYQSS 271
Query: 207 CHL 215
CHL
Sbjct: 272 CHL 274
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Frame = +2
Query: 518 VCGANGVTYGSEC------AAWSEYVSVDYVGPCLAVGYISDQMEPKCTFDRIVC 664
VCG +GVTY SEC S++V + G C ++ + +C VC
Sbjct: 551 VCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKCDECLHVQCRYGEECRSGVCVC 605
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 33.5 bits (73), Expect = 0.17
Identities = 21/72 (29%), Positives = 30/72 (41%)
Frame = +3
Query: 18 FGVQSPCAGVTCPRRHVCVPSSNVCLSRLQTSCPQHVCVNTTDCNSQAAMPVCDTDGRTH 197
FG PC G CP C + R + C + +N+ VC TDG+T+
Sbjct: 298 FGRCDPCHGHKCPNGQTCQLGVD---RRPECKCSEQCTMNSAH--------VCGTDGKTY 346
Query: 198 ANPCHLVMSGRK 233
N C L ++ K
Sbjct: 347 LNECFLKLAACK 358
Score = 33.5 bits (73), Expect = 0.17
Identities = 23/62 (37%), Positives = 28/62 (45%)
Frame = +3
Query: 36 CAGVTCPRRHVCVPSSNVCLSRLQTSCPQHVCVNTTDCNSQAAMPVCDTDGRTHANPCHL 215
C + C CVPS + S CPQ C N A M VC +DG T++N C L
Sbjct: 779 CHSLRCFHGAKCVPSPS---SFPDCICPQS-C-NMNHLGIVANMTVCGSDGTTYSNLCEL 833
Query: 216 VM 221
M
Sbjct: 834 KM 835
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +3
Query: 27 QSPCAGVTCPRRHVCVPSSNVCLSRLQTSCPQHVCVNTTDCNSQAAMPVCDTDGRTHANP 206
++PC + C CV + + + CP C N D S + PVC + G + +
Sbjct: 223 RNPCEDLRCGPGEDCVVNQINGILLAKCVCPTQ-CPNYGD--SVESSPVCSSHGVDYQSS 279
Query: 207 CHL 215
CHL
Sbjct: 280 CHL 282
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Frame = +2
Query: 518 VCGANGVTYGSEC------AAWSEYVSVDYVGPCLAVGYISDQMEPKCTFDRIVC 664
VCG +GVTY SEC S++V + G C ++ + +C VC
Sbjct: 559 VCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKCDECLHVQCRYGEECRSGVCVC 613
>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical
protein ZC84.6 protein.
Length = 1474
Score = 32.3 bits (70), Expect = 0.39
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +3
Query: 27 QSPCAGVTCPRRHVCVPSSNVCLSRLQTSCPQHVCVNTTD 146
QS + CP H C VC R+QT C Q + V D
Sbjct: 410 QSCASNNDCPSSHECKMDQAVCCPRMQTICTQPLRVGNCD 449
>Z98877-6|CAD56617.1| 432|Caenorhabditis elegans Hypothetical
protein Y69H2.3d protein.
Length = 432
Score = 31.1 bits (67), Expect = 0.91
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = +3
Query: 9 EIEFGVQSPCAGVTCPRRHVCVPSSNVCLSRLQTSCPQHVCVNTTDCNSQAAM---PVCD 179
E+ +PC CP+++ P N CL Q C C++ N+Q C
Sbjct: 103 EVSNECHNPCTEKKCPQKNA--PQVN-CLMACQVGCS---CMDGFVRNNQGVCVKEAECP 156
Query: 180 TDGRTHANPCHLV 218
G T NPC+LV
Sbjct: 157 AIGSTDENPCNLV 169
>Z47068-6|CAA87334.2| 272|Caenorhabditis elegans Hypothetical
protein F15G9.5 protein.
Length = 272
Score = 31.1 bits (67), Expect = 0.91
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +3
Query: 57 RRHVCVPSSNVCLSRLQTSCPQHVCVNTTDCNSQAAMPVCDTDGRTHANPCHL 215
R H+C N+C T C + CV+ C S M C+ D N C+L
Sbjct: 32 RTHMCSAEGNICSENAATVCRNNTCVSA--C-SLRGMQECECDAE-EDNYCYL 80
>U46675-3|AAB52643.1| 375|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 10 protein.
Length = 375
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = +3
Query: 27 QSPCAGVTCPRRHVCVP-SSNVCLSRLQTSCPQHVCVNTTDCNSQAAMPVCD 179
Q+PC C P N C + Q +C V C Q A P CD
Sbjct: 237 QNPCCQQQAQSTCDCAPVQQNPCCQQAQPACDCAPVVQQNPCACQQAQPSCD 288
>U39993-3|AAK72060.1| 728|Caenorhabditis elegans Hypothetical
protein F47E1.4 protein.
Length = 728
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
Frame = +3
Query: 138 TTDCNSQAAM------PVCDTDGRTHANPCH 212
T +CNSQ + PVC DG + +PCH
Sbjct: 521 TNECNSQCSCENAHLYPVCSADGTAYFSPCH 551
>Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical
protein Y69H2.3c protein.
Length = 731
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +3
Query: 36 CAGVTCPRRHVCVPSSNVCLSR-LQTSCP-QHVCVNT 140
CA CP C+P+SN LS +CP +C T
Sbjct: 334 CAKAPCPSHAACIPNSNETLSSCAAVTCPVGEICTET 370
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +3
Query: 30 SPCAGVTCPRRHVCVPSSNVCLSRLQTSCPQHV-CVNTTDCNSQAAMPVCD 179
S CA V+CP C ++ C L CP+ V CV + A CD
Sbjct: 401 SGCASVSCPVGERCEETTMAC---LMAPCPKAVSCVPMNGNQNSTARQGCD 448
>Z98877-4|CAB54473.2| 796|Caenorhabditis elegans Hypothetical
protein Y69H2.3b protein.
Length = 796
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +3
Query: 36 CAGVTCPRRHVCVPSSNVCLSR-LQTSCP-QHVCVNT 140
CA CP C+P+SN LS +CP +C T
Sbjct: 399 CAKAPCPSHAACIPNSNETLSSCAAVTCPVGEICTET 435
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +3
Query: 30 SPCAGVTCPRRHVCVPSSNVCLSRLQTSCPQHV-CVNTTDCNSQAAMPVCD 179
S CA V+CP C ++ C L CP+ V CV + A CD
Sbjct: 466 SGCASVSCPVGERCEETTMAC---LMAPCPKAVSCVPMNGNQNSTARQGCD 513
>U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical
protein ZK813.6 protein.
Length = 251
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 120 QHVCVNTTDCNSQAAMPVCDTDGRTHANPCHLVMS 224
Q C T C ++ PVCD G+THAN C + S
Sbjct: 116 QEKCSCTAPCPTEWN-PVCDKKGQTHANFCTFLNS 149
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 126 VCVNTTDCNSQAAMPVCDTDGRTHANPC 209
VC Q ++ VCD++G TH + C
Sbjct: 168 VCCEDMCSAGQTSLTVCDSEGNTHTDIC 195
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 27 QSPCAGVTCPRRHVCVPSSNVCLSRLQTSCPQHVCV 134
++PC V CP+ VCV SS C + PQ CV
Sbjct: 649 KNPCKEVKCPQGSVCVMSSIQCYQK-GNCVPQPRCV 683
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 33 PCAGVTCPRRHVCVPSSNVCLSRLQTSCPQ 122
PC GVTC +CVP++ C+++ + P+
Sbjct: 934 PCEGVTCGIDSLCVPTTVPCVTKPCPTIPR 963
>U64833-11|AAB04822.2| 615|Caenorhabditis elegans Hypothetical
protein B0507.1 protein.
Length = 615
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 51 CPRRHVCVPSSNVCLSRLQTSCPQ 122
CP H+C P VC ++L T CP+
Sbjct: 117 CPSTHICNPVHGVCCTKLPT-CPK 139
>AL021475-1|CAA16312.1| 758|Caenorhabditis elegans Hypothetical
protein Y32F6B.1 protein.
Length = 758
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 129 CVNTTDCNSQAAMPVCDTDGRTHANPCHLVMSGRKMGY 242
C + C PVCD G + +PCH +G MG+
Sbjct: 512 CRDDCMCEQTPLYPVCDVSGSAYYSPCH---AGCAMGW 546
>Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical
protein ZK1067.7 protein.
Length = 373
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 81 SNVCLSRLQTSCPQHVCVNTTDCNSQ 158
SN C ++ Q++CP +CV CNSQ
Sbjct: 255 SNSCSNQCQSACPTPICVQ--QCNSQ 278
>U39993-2|AAK72059.1| 744|Caenorhabditis elegans Hypothetical
protein F47E1.2 protein.
Length = 744
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3
Query: 129 CVNTTDCNSQAAMPVCDTDGRTHANPCH 212
C + C + PVCD G + +PCH
Sbjct: 532 CNSQCSCENARLYPVCDQTGFAYFSPCH 559
>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical
protein F30H5.3 protein.
Length = 1599
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +3
Query: 39 AGVTCPRRHVCVPSSNVCLSRLQTSCPQ 122
A CP H C NVC R Q C Q
Sbjct: 538 ASADCPSTHECQSDHNVCCPRPQAICSQ 565
>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical
protein ZC84.1 protein.
Length = 1556
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3
Query: 51 CPRRHVCVPSSNVCLSRLQTSCPQHVCVNTTDC 149
CP H C VC R QT C Q + + DC
Sbjct: 505 CPSSHECKADQGVCCPRKQTICAQPLRIG--DC 535
>AF039719-10|AAB96751.2| 568|Caenorhabditis elegans Hypothetical
protein K04F10.2 protein.
Length = 568
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 616 YIGPNGAEMYLRQNSLSSVEEGRLSRVHGAGRLLPEM 726
YIG NG E+Y R+ L + E L+ + +LP +
Sbjct: 435 YIGLNGIELYNRKGELMKIREHNLAAFPESVNILPNI 471
>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
protein C29A12.4 protein.
Length = 1560
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 90 CLSRLQTSCPQHVCVNTTDCNSQAAMPVCDTDGRTH-ANPCHLVMSGRKMGYWG 248
C S+ +S Q VC+N +C S P CD H C + + ++ + G
Sbjct: 223 CKSKSMSSREQFVCLNDGECYSSNDGPHCDCQFSDHDGRNCEIEKNDGELTFGG 276
>Z69718-3|CAA93538.1| 365|Caenorhabditis elegans Hypothetical
protein W06D11.4 protein.
Length = 365
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -3
Query: 242 IAHLPAAHHKMAGVRMCSAISVTHRHSGLRIAVCCIHTNVLRAGCLETRQAY 87
++ +PA HH++ R+CS ++V + + L NVLR + T Y
Sbjct: 119 LSRVPAKHHEITSTRLCS-LTVAIKLAELAYRFSVPDANVLRHYAVGTSTVY 169
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 641 CTFDRIVCPALKKDDCQGFTAPG-ACCPRCGGALRILYSKK 760
C ++ CP LK D+C P CP C R++ K+
Sbjct: 201 CPPEQPCCPELKLDNCLASVPPCLRACPSCPCRKRLMLGKR 241
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,152,896
Number of Sequences: 27780
Number of extensions: 427171
Number of successful extensions: 1359
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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