Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1493
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.26 
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   3.1  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   3.1  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    21   9.6  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    21   9.6  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    21   9.6  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    21   9.6  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    21   9.6  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    21   9.6  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    21   9.6  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   9.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +3

Query: 33  PCAGVTCPRRHVCVPSSNVCLSRLQTSCPQHVCVNTTDCNSQAAMPVCDTDGRTHANPCH 212
           PCA   C     C  S N  ++         VCV    C  +   PVC ++G+ +AN C 
Sbjct: 81  PCASKYCGIGKECELSPNSTIA---------VCVCMRKC-PRRHRPVCASNGKIYANHCE 130

Query: 213 L 215
           L
Sbjct: 131 L 131


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 209 PSCDERQEDGLLGTVFRGCSSVS 277
           P C++  + G+LGT  R C+  S
Sbjct: 85  PFCEKNPKLGILGTHGRQCNDTS 107


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 209 PSCDERQEDGLLGTVFRGCSSVS 277
           P C++  + G+LGT  R C+  S
Sbjct: 86  PFCEKNPKLGILGTHGRQCNDTS 108


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 228 RKMGYWGPCFEDVPR 272
           R MG W P  E +PR
Sbjct: 135 RPMGPWVPMQEQIPR 149


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 228 RKMGYWGPCFEDVPR 272
           R MG W P  E +PR
Sbjct: 135 RPMGPWVPMQEQIPR 149


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 228 RKMGYWGPCFEDVPR 272
           R MG W P  E +PR
Sbjct: 135 RPMGPWVPMQEQIPR 149


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 228 RKMGYWGPCFEDVPR 272
           R MG W P  E +PR
Sbjct: 135 RPMGPWVPMQEQIPR 149


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 228 RKMGYWGPCFEDVPR 272
           R MG W P  E +PR
Sbjct: 135 RPMGPWVPMQEQIPR 149


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 228 RKMGYWGPCFEDVPR 272
           R MG W P  E +PR
Sbjct: 135 RPMGPWVPMQEQIPR 149


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 228 RKMGYWGPCFEDVPR 272
           R MG W P  E +PR
Sbjct: 135 RPMGPWVPMQEQIPR 149


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 228 RKMGYWGPCFEDVPR 272
           R MG W P  E +PR
Sbjct: 138 RPMGPWVPMQEQIPR 152


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 421 QTISLKHLHY 450
           QT SL+HLHY
Sbjct: 357 QTQSLQHLHY 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,955
Number of Sequences: 438
Number of extensions: 5360
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)