Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1493
         (772 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g44160.1 68414.m05100 DNAJ chaperone C-terminal domain-contai...    32   0.48 
At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1 ...    28   5.9  
At5g05930.1 68418.m00656 guanylyl cyclase-related (GC1) similar ...    28   5.9  
At4g24180.1 68417.m03470 pathogenesis-related thaumatin family p...    28   5.9  

>At1g44160.1 68414.m05100 DNAJ chaperone C-terminal
           domain-containing protein contains Pfam profile PF01556:
           DnaJ C terminal region
          Length = 357

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -2

Query: 357 RMVLLQIERKEKKNSFRSLNDGKKTKLLTEEHPRNTVPNS 238
           R +   + R + K+  ++ +D K+TK L EEH RNT PN+
Sbjct: 26  RSISRVLPRDKTKHHHKAKHDTKETKRLDEEHKRNT-PNA 64


>At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1
           significant, 2 weak WD-40 repeats (PF00400); similar to
           transducin beta-like 1 protein.(SP:O60907) [Homo
           sapiens]
          Length = 467

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +3

Query: 9   EIEFGVQSPCAGVTCPRRHVCVP-SSNVCLSRLQTSCPQHVCVNTTDCNSQAAMPVCDTD 185
           + +  VQ+P  G+T  R+++ V  S+  CLS L+ S  + V     +C+  + +P  + D
Sbjct: 129 QFQVDVQTP-VGLT--RKNILVAGSAGGCLSILRVSKDRQVYDGVIECDPVSVLPCKEND 185

Query: 186 GRTHANPCHLV 218
                 P H++
Sbjct: 186 TEEREAPEHIL 196


>At5g05930.1 68418.m00656 guanylyl cyclase-related (GC1) similar to
           guanylyl cyclase (GC1) GI:21436486 from [Arabidopsis
           thaliana]; identical to cDNA  putative guanylate cyclase
           GI:21436486
          Length = 274

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 220 ITRWQ-GFACVLPSVSHTGIAACELQSVVFTQTC*GQDVWRRD 95
           +  W  G ACVL  +  +GIA+C L+ +   + C    +W  D
Sbjct: 65  LASWDCGLACVLMVLRASGIASCTLEDL--AEICSTNSIWTVD 105


>At4g24180.1 68417.m03470 pathogenesis-related thaumatin family
           protein similar to SP|P28493 Pathogenesis-related
           protein 5 precursor (PR-5) {Arabidopsis thaliana};
           contains Pfam profile PF00314: Thaumatin family
          Length = 255

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 593 GPCLAVGYISDQMEPKCTFD-RIVCPALKKDDCQGFTAPGACC 718
           G CL  G ++D +  KC  + R    +  K  C+ F +P  CC
Sbjct: 159 GTCLTTGCVTD-LNQKCPTELRFGSGSACKSACEAFGSPEYCC 200


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,928,071
Number of Sequences: 28952
Number of extensions: 387223
Number of successful extensions: 991
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)