Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1491
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 30 0.44
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 29 0.76
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 28 1.8
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 27 3.1
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 26 5.4
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 7.1
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 25 9.4
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 25 9.4
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 25 9.4
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S... 25 9.4
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 29.9 bits (64), Expect = 0.44
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 176 RIRNIKRSANDFTTASGTRSTSDVETSG 259
RI NIK S D T G ++T+D+E SG
Sbjct: 51 RIHNIKVSLKDDTLGIGAKATNDLEWSG 78
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 29.1 bits (62), Expect = 0.76
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +3
Query: 306 PFRCKIEEVRLASRDECFNRSWNRRLTKSPAPQLPSPFPRKI---SGSLNYFH*RFNHVI 476
P+ E V++A + ++++NR+ + P P PS PR + SG +N + + I
Sbjct: 604 PYDLPEEIVQVAQQKRSVSQNYNRQYSFQPRPATPSNPPRSLPPPSGQVNAPMSQTPNPI 663
Query: 477 SWSYRN 494
S++Y++
Sbjct: 664 SFAYQH 669
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 579 EHLFWGNNCISTCQAKFMNVPFFFTDLSLVFRQAKGRICVI 701
E FW +CI+ QAK ++ ++L + G IC I
Sbjct: 692 ETTFWQQSCIAEFQAKLISFLTHSESMALQYSDVVGLICKI 732
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/69 (21%), Positives = 29/69 (42%)
Frame = +3
Query: 543 PYKIAIKMSRFLEHLFWGNNCISTCQAKFMNVPFFFTDLSLVFRQAKGRICVIKKLFELK 722
P + M +L ++W + + Q + + +FTDL L F + +F +
Sbjct: 712 PIIVLSTMRPYLCSIYWAGSRLCFVQPRIILGIMYFTDLILFFLDTYLWYIIFNTIFSVL 771
Query: 723 TSYCNGFSL 749
S+ G S+
Sbjct: 772 RSFVLGISI 780
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = -2
Query: 386 RQPSIPRSVKALISRRQPHFFNLTSKRQGLRHGIISSV 273
+ PS+ ++K LI +RQP+ K + +I+++
Sbjct: 183 KNPSVSEAIKELIKKRQPYIGAFLLKDENTDTDVITNI 220
>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 7.1
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -3
Query: 370 QDLLKHSSRDANRTSSILHRNGRVYVMESYLVSGVSGSARLHVRSGTRP*SCREV 206
+D+LK D+ T+S +N ++ESY V +A + RP CRE+
Sbjct: 69 KDILKEQPTDSKSTTSSAPKNSPFSLLESYDCLQVD-TATVQKVLIKRPEGCREL 122
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 558 IKMSRFLEHLFWGNNCISTCQAKFMNVPFFFTDLSLVF 671
I + +F H W NNC+ A++ + F + L+F
Sbjct: 179 ICVEKFDHHCIWINNCVGLNNARYFFL-FLLCTIQLLF 215
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 133 SRYTIEVADFDFGQENPEYKTFSERLHDSFRDAFHFGRGDERSR 264
+RYT E FG +PE + + ++ +F A HF R +E +R
Sbjct: 46 NRYTNEPVQPFFGALDPEEEKYFQQAEQAF--ANHFTRENEDTR 87
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 618 QAKFMNVPFFFTDLSLVFRQAKGRICVIKKLFELKTSYCNGFSLF 752
Q K + + TDLSL F +I ++ L ++C G S++
Sbjct: 556 QPKILLSLLYLTDLSLFFLDTYLWYILISTIYSLAYAFCLGISVW 600
>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
Mde5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 190 YIPDSPGRNRNLQLLSCTLICVDNMQYRT 104
Y+ PG + LL+CTLI V+ RT
Sbjct: 438 YLIKMPGSETMIDLLTCTLIEVEGEVMRT 466
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,153,543
Number of Sequences: 5004
Number of extensions: 63503
Number of successful extensions: 169
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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