Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1491
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0359 - 2633735-2634115,2634345-2634600,2634708-2635552,263...    30   1.8  
04_04_1076 - 30639835-30640898,30641613-30641915,30642008-306420...    30   2.4  
01_05_0494 + 22701994-22703117,22703526-22703580                       29   3.2  
02_05_0500 - 29538409-29539283,29540306-29541641                       28   7.4  
08_01_0453 + 4005027-4005543,4006795-4006931                           28   9.8  

>07_01_0359 -
           2633735-2634115,2634345-2634600,2634708-2635552,
           2635681-2635956,2636778-2636941,2637924-2638197
          Length = 731

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 8/33 (24%), Positives = 21/33 (63%)
 Frame = +1

Query: 25  YRAAVPTQLSVIVVPVFFCLVAVILVVFGIAYY 123
           Y   VP  + ++ + + + ++A +++ FG+AY+
Sbjct: 563 YNTRVPNDMLIVTIVLCYSVIAPLIIPFGVAYF 595


>04_04_1076 -
           30639835-30640898,30641613-30641915,30642008-30642068,
           30643076-30644380
          Length = 910

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -3

Query: 352 SSRDANRTSSILHRNGRV-YVMESYLVSGVSGSARLHVRSGTRP*SCREVVR*TFYIPDS 176
           SSR A RTSS    +G    V E    SG  GS+   +  GT   SCR   R T   P S
Sbjct: 590 SSRSAKRTSSASSSHGSSGSVEERPYSSGRHGSSG-RMEEGTAAPSCRHRSRRTDKRPSS 648

Query: 175 PGRN 164
            GR+
Sbjct: 649 SGRH 652


>01_05_0494 + 22701994-22703117,22703526-22703580
          Length = 392

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 315 CKIEEVRLASRDECFNRSWNRRLTKSPAPQLPSP 416
           C+ + VR+A    C NR W   + + P P  P+P
Sbjct: 23  CRADRVRMA----CVNRQWRAAVREGPRPPPPAP 52


>02_05_0500 - 29538409-29539283,29540306-29541641
          Length = 736

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 10  ETVTIYRAAVPTQLSVIVVPVFFCLVAVILVVFGIAYYQHRSR 138
           E  T  +AA+P     +VV V  C VAV+L +F   Y + R +
Sbjct: 301 EGATKKKAALPGWKLGVVVGVSSCAVAVVLGLFAALYIRKRRK 343


>08_01_0453 + 4005027-4005543,4006795-4006931
          Length = 217

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 94  ILVVFGIAYYQHRSRYTIEVADFDFGQENPEYKTFSERLHDSFRDAFHFGRGDERSRSHR 273
           I + F    + HR     E A    G++  +++T  + L D+ RDA  +  G   + SHR
Sbjct: 32  IYITFVNTEHNHRRALAAEGAAAVRGRDGFQFETIPDGLLDADRDAADYDLGLSVATSHR 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,431,926
Number of Sequences: 37544
Number of extensions: 391442
Number of successful extensions: 1161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)