Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1491
         (792 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58324| Best HMM Match : Keratin_B2 (HMM E-Value=0.47)               31   1.1  
SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_38258| Best HMM Match : Sec7 (HMM E-Value=5.1e-22)                  28   10.0 

>SB_58324| Best HMM Match : Keratin_B2 (HMM E-Value=0.47)
          Length = 199

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 9   GDCYYLSSCGTHAVICDRGASVFLPRCGDSRSVRYCI 119
           G  +Y+SSCG    I   G + ++  CG +  +  CI
Sbjct: 53  GQAHYISSCGQAHYISSCGQAHYISSCGQAHYISSCI 89



 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 9   GDCYYLSSCGTHAVICDRGASVFLPRCGDSRSVRYC 116
           G  +Y+SSCG    I   G + ++  CG +  +  C
Sbjct: 35  GQAHYISSCGQAHYITSCGQAHYISSCGQAHYISSC 70



 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 9   GDCYYLSSCGTHAVICDRGASVFLPRCGDSRSVRYC 116
           G  +YLS CG    I   G + ++  CG +  +  C
Sbjct: 26  GQAHYLSPCGQAHYISSCGQAHYITSCGQAHYISSC 61



 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 9   GDCYYLSSCGTHAVICDRGASVFLPRCGDSRSVRYC 116
           G  +Y++SCG    I   G + ++  CG +  +  C
Sbjct: 44  GQAHYITSCGQAHYISSCGQAHYISSCGQAHYISSC 79


>SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1324

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 100  VVFGIAYYQHRSRYT-IEVADFDFGQENPEYKTFSERLHDSFRDAF 234
            VV G    +HR  +  + VAD +FG E  E KT  ++  D  ++ F
Sbjct: 1158 VVDGKVPLRHRRSWEKLFVADLEFGDEEQEEKTNKKKFKDVMKNFF 1203


>SB_38258| Best HMM Match : Sec7 (HMM E-Value=5.1e-22)
          Length = 237

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 132 SVLIICNTEHYENHR--NEAEKHWHHDHR*LRGYRSS 28
           +++I  +  HY +H   +    HWHH H  +R +  S
Sbjct: 163 TIVIAIHHHHYYHHHLLHHHHHHWHHHHLIIRHHHHS 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,348,458
Number of Sequences: 59808
Number of extensions: 466469
Number of successful extensions: 1284
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)