Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1491
         (792 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069105-1|AAL39250.1|  573|Drosophila melanogaster GH12359p pro...    85   8e-17
AE014297-2822|AAF55782.2|  515|Drosophila melanogaster CG16953-P...    85   8e-17
AY118336-1|AAM48365.1| 1307|Drosophila melanogaster LD28489p pro...    33   0.45 
AE014134-3012|AAN11020.1| 1307|Drosophila melanogaster CG31793-P...    33   0.45 
X76208-1|CAA53800.1|  518|Drosophila melanogaster protein 33-spe...    29   5.5  
K02621-1|AAA28968.1|  531|Drosophila melanogaster protein ( D.me...    29   5.5  
AE014297-1995|AAS65155.1|  518|Drosophila melanogaster CG4898-PK...    29   5.5  

>AY069105-1|AAL39250.1|  573|Drosophila melanogaster GH12359p
           protein.
          Length = 573

 Score = 85.4 bits (202), Expect = 8e-17
 Identities = 48/100 (48%), Positives = 68/100 (68%), Gaps = 4/100 (4%)
 Frame = +1

Query: 1   VSRETVTIYRAAVPTQLSVIVVPVFFCLVAVILVVFGIAYY-QHRSRYTIEVADFDFGQE 177
           +++ T+ +Y A   +QLSV+VVPV   LVAVILVVFG+AYY Q  +R+ +EVADF+FG  
Sbjct: 448 LNQVTINMYEAQRQSQLSVVVVPVSCTLVAVILVVFGVAYYIQRGNRFNVEVADFNFGDT 507

Query: 178 ---NPEYKTFSERLHDSFRDAFHFGRGDERSRSHRTLDMI 288
              + EYKTF +RL DS RDA  +    +R  S  ++D++
Sbjct: 508 QSVDMEYKTFPQRLIDSIRDACTW--PGQRRHSQSSVDLM 545


>AE014297-2822|AAF55782.2|  515|Drosophila melanogaster CG16953-PA
           protein.
          Length = 515

 Score = 85.4 bits (202), Expect = 8e-17
 Identities = 48/100 (48%), Positives = 68/100 (68%), Gaps = 4/100 (4%)
 Frame = +1

Query: 1   VSRETVTIYRAAVPTQLSVIVVPVFFCLVAVILVVFGIAYY-QHRSRYTIEVADFDFGQE 177
           +++ T+ +Y A   +QLSV+VVPV   LVAVILVVFG+AYY Q  +R+ +EVADF+FG  
Sbjct: 390 LNQVTINMYEAQRQSQLSVVVVPVSCTLVAVILVVFGVAYYIQRGNRFNVEVADFNFGDT 449

Query: 178 ---NPEYKTFSERLHDSFRDAFHFGRGDERSRSHRTLDMI 288
              + EYKTF +RL DS RDA  +    +R  S  ++D++
Sbjct: 450 QSVDMEYKTFPQRLIDSIRDACTW--PGQRRHSQSSVDLM 487


>AY118336-1|AAM48365.1| 1307|Drosophila melanogaster LD28489p
           protein.
          Length = 1307

 Score = 33.1 bits (72), Expect = 0.45
 Identities = 24/59 (40%), Positives = 28/59 (47%)
 Frame = +1

Query: 187 YKTFSERLHDSFRDAFHFGRGDERSRSHRTLDMIP*RKPCRFDVRLKKCGWRLEMSALT 363
           YKT +E    S  D F  G  DE +R  R  D    RKP    V  +  GWRL MS +T
Sbjct: 43  YKTLNEHEAASLGDEFFQGWEDEVARCRRKGDSG--RKPSVLRVIGRVFGWRLIMSGIT 99


>AE014134-3012|AAN11020.1| 1307|Drosophila melanogaster CG31793-PA
           protein.
          Length = 1307

 Score = 33.1 bits (72), Expect = 0.45
 Identities = 24/59 (40%), Positives = 28/59 (47%)
 Frame = +1

Query: 187 YKTFSERLHDSFRDAFHFGRGDERSRSHRTLDMIP*RKPCRFDVRLKKCGWRLEMSALT 363
           YKT +E    S  D F  G  DE +R  R  D    RKP    V  +  GWRL MS +T
Sbjct: 43  YKTLNEHEAASLGDEFFQGWEDEVARCRRKGDSG--RKPSVLRVIGRVFGWRLIMSGIT 99


>X76208-1|CAA53800.1|  518|Drosophila melanogaster protein
           33-specific exons protein.
          Length = 518

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 369 WNRRLTKSPAPQLPSPFPRKIS 434
           WN R  K P P+LP+P P +++
Sbjct: 289 WNPRNPKPPTPKLPTPTPEELA 310


>K02621-1|AAA28968.1|  531|Drosophila melanogaster protein (
           D.melanogaster tropomyosingene isoform 33 (9C), exon
           10C. ).
          Length = 531

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 369 WNRRLTKSPAPQLPSPFPRKIS 434
           WN R  K P P+LP+P P +++
Sbjct: 302 WNPRNPKPPTPKLPTPTPEELA 323


>AE014297-1995|AAS65155.1|  518|Drosophila melanogaster CG4898-PK,
           isoform K protein.
          Length = 518

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 369 WNRRLTKSPAPQLPSPFPRKIS 434
           WN R  K P P+LP+P P +++
Sbjct: 289 WNPRNPKPPTPKLPTPTPEELA 310


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,135,660
Number of Sequences: 53049
Number of extensions: 678554
Number of successful extensions: 2347
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2334
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3675273108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)