Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1491
         (792 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70780-5|CAD91633.1|  779|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z70780-4|CAD54137.2|  786|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z70780-3|CAA94828.2|  828|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z69903-2|CAA93774.1|  364|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>Z70780-5|CAD91633.1|  779|Caenorhabditis elegans Hypothetical
           protein F46B6.5c protein.
          Length = 779

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/68 (27%), Positives = 27/68 (39%)
 Frame = +3

Query: 213 RQLQGRVPLRTWRRAEPLTPDTRYDSMT*TLPFRCKIEEVRLASRDECFNRSWNRRLTKS 392
           R   G  P R  +  +P+ PD         +PF  K+E+     R     RS +R L   
Sbjct: 388 RMQPGTTPGRVGQPVQPMKPDNAIPKKAAPVPFEPKLEDRERIIR-RSGGRSQSRSLRYG 446

Query: 393 PAPQLPSP 416
            +PQ   P
Sbjct: 447 SSPQQSRP 454


>Z70780-4|CAD54137.2|  786|Caenorhabditis elegans Hypothetical
           protein F46B6.5b protein.
          Length = 786

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/68 (27%), Positives = 27/68 (39%)
 Frame = +3

Query: 213 RQLQGRVPLRTWRRAEPLTPDTRYDSMT*TLPFRCKIEEVRLASRDECFNRSWNRRLTKS 392
           R   G  P R  +  +P+ PD         +PF  K+E+     R     RS +R L   
Sbjct: 388 RMQPGTTPGRVGQPVQPMKPDNAIPKKAAPVPFEPKLEDRERIIR-RSGGRSQSRSLRYG 446

Query: 393 PAPQLPSP 416
            +PQ   P
Sbjct: 447 SSPQQSRP 454


>Z70780-3|CAA94828.2|  828|Caenorhabditis elegans Hypothetical
           protein F46B6.5a protein.
          Length = 828

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/68 (27%), Positives = 27/68 (39%)
 Frame = +3

Query: 213 RQLQGRVPLRTWRRAEPLTPDTRYDSMT*TLPFRCKIEEVRLASRDECFNRSWNRRLTKS 392
           R   G  P R  +  +P+ PD         +PF  K+E+     R     RS +R L   
Sbjct: 388 RMQPGTTPGRVGQPVQPMKPDNAIPKKAAPVPFEPKLEDRERIIR-RSGGRSQSRSLRYG 446

Query: 393 PAPQLPSP 416
            +PQ   P
Sbjct: 447 SSPQQSRP 454


>Z69903-2|CAA93774.1|  364|Caenorhabditis elegans Hypothetical
           protein F46F2.4 protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 609 RYSYCPKISVQETWTFL 559
           RY+YC K+  +ETW  L
Sbjct: 192 RYAYCKKVYTEETWNTL 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,363,813
Number of Sequences: 27780
Number of extensions: 359745
Number of successful extensions: 1087
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)