Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1491
         (792 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34090.2 68415.m04174 expressed protein  similar to GP|130183...    31   0.88 
At2g34090.1 68415.m04173 expressed protein  similar to GP|130183...    31   0.88 
At5g47430.1 68418.m05844 expressed protein                             29   2.7  
At5g16190.1 68418.m01892 glycosyl transferase family 2 protein s...    28   8.2  

>At2g34090.2 68415.m04174 expressed protein  similar to
           GP|1301832|gnl|PID|e239862|Z71287
          Length = 471

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -2

Query: 389 FRQPSIPRSVKALISRRQPHFFNLTS 312
           ++ PS+P S+ +L   ++PH++N TS
Sbjct: 13  YKSPSLPLSLHSLFRSKKPHYYNSTS 38


>At2g34090.1 68415.m04173 expressed protein  similar to
           GP|1301832|gnl|PID|e239862|Z71287
          Length = 445

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -2

Query: 389 FRQPSIPRSVKALISRRQPHFFNLTS 312
           ++ PS+P S+ +L   ++PH++N TS
Sbjct: 13  YKSPSLPLSLHSLFRSKKPHYYNSTS 38


>At5g47430.1 68418.m05844 expressed protein 
          Length = 879

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +1

Query: 10  ETVTIYRAAVPTQLSVIVVPVFFCLVAVILVVFGIAYYQHRSRYTIEVADFDFGQENPEY 189
           ET +  R  VP+  S  V        A   V  G + ++H SR  IEVAD++   E+  +
Sbjct: 786 ETSSGKRRKVPSSSSTSVTDPSASASAAAAV--GTSVHRHSSRKEIEVADYESSDEDRHF 843

Query: 190 K 192
           K
Sbjct: 844 K 844


>At5g16190.1 68418.m01892 glycosyl transferase family 2 protein
           similar to cellulose synthase from Agrobacterium
           tumeficiens [gi:710492] and Agrobacterium radiobacter
           [gi:710493]; contains Pfam glycosyl transferase, group 2
           family protein domain PF00535
          Length = 504

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +1

Query: 52  SVIVVPVFFCLVAVILVV 105
           S+++VP+F CLVA+ LV+
Sbjct: 11  SLLIVPMFKCLVAICLVI 28


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,159,778
Number of Sequences: 28952
Number of extensions: 328348
Number of successful extensions: 938
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)