Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1488
         (845 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    26   0.43 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.57 
AY052624-1|AAL15472.1|  212|Tribolium castaneum kynurenine 3-mon...    25   0.57 
AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine 3-mon...    25   0.57 
AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine 3-mon...    25   0.57 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.75 
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    24   1.3  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 142 PSGT-PSMSPQKGSPASQPYTLNRN*TVAAVSSRRNSPHT 26
           PSG  P ++P  G P S PYT+  N   + +SS    P++
Sbjct: 110 PSGNVPPLTPSPGPP-SHPYTVISNGYSSPMSSGSYDPYS 148


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 177  NRKCFREGESRRAPSAGPMLPVAAVT 254
            N +C  +  S  APS  PM+P   VT
Sbjct: 2281 NTECHPDASSTMAPSTTPMVPDKPVT 2306


>AY052624-1|AAL15472.1|  212|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 212

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 3   SVRCTRFCVCGEFLRLLTAATVQFLFNVYGCEAGDPFCGDIDGVPLGQRGVLPGSTQ 173
           SV+C  + V  +FL +  AA     F   G  AG   C  +DG+   +   + GS +
Sbjct: 53  SVKCKPYHVGSKFLLIGDAAHAMVPFYGQGMNAGFEDCFLLDGILERRSNDIAGSIE 109


>AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 3   SVRCTRFCVCGEFLRLLTAATVQFLFNVYGCEAGDPFCGDIDGVPLGQRGVLPGSTQ 173
           SV+C  + V  +FL +  AA     F   G  AG   C  +DG+   +   + GS +
Sbjct: 286 SVKCKPYHVGSKFLLIGDAAHAMVPFYGQGMNAGFEDCFLLDGILERRSNDIAGSIE 342


>AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 3   SVRCTRFCVCGEFLRLLTAATVQFLFNVYGCEAGDPFCGDIDGVPLGQRGVLPGSTQ 173
           SV+C  + V  +FL +  AA     F   G  AG   C  +DG+   +   + GS +
Sbjct: 286 SVKCKPYHVGSKFLLIGDAAHAMVPFYGQGMNAGFEDCFLLDGILERRSNDIAGSIE 342


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 829 SSARTRAPPCTRCASSTPADTP 764
           +SA + APP    AS TP D P
Sbjct: 40  NSAASPAPPEEEAASPTPGDVP 61


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 656 LFCWARSKPARAVTSALGWCNFTSQ 582
           L CW  +K A  +   L W  +T++
Sbjct: 375 LTCWQDTKSANKIAMKLFWAQYTNK 399


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,878
Number of Sequences: 336
Number of extensions: 4665
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23348025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)