Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1488
(845 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0925 - 7771465-7772195,7772284-7772431,7773706-7774317 33 0.22
01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311 31 1.2
08_02_1019 - 23657175-23658047 30 2.7
07_01_0975 + 8223269-8224354 29 4.7
04_03_1015 - 21734381-21736534 29 4.7
03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856 29 4.7
03_05_0118 + 20999241-20999597,20999800-20999895 29 4.7
03_02_0948 - 12645972-12646010,12646612-12646750,12646846-126470... 29 4.7
08_01_0625 + 5444547-5444912 29 6.2
04_04_0055 + 22403608-22403865,22403977-22404075,22404172-224042... 29 6.2
>07_01_0925 - 7771465-7772195,7772284-7772431,7773706-7774317
Length = 496
Score = 33.5 bits (73), Expect = 0.22
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Frame = -2
Query: 844 AAPCRSSARTRAPPCTRCASSTPADTPDGH--VRWAVGDEEAHPLVLD--EGRRRSNVLL 677
+A ++A +R PP R A S P + P G R A G A P+ + EG++ S
Sbjct: 31 SAAAAANAPSRPPPPPRVAKSLPREQPGGRGSGRGAEGSASASPVAVGDREGKKTSTATQ 90
Query: 676 LHGHRCFSSAGRDRSRLGQSLPHSAG 599
GH SS R +L + P G
Sbjct: 91 GGGH-ASSSPRRLGEKLARDHPGGGG 115
>01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311
Length = 705
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = -3
Query: 765 LMDTSDGRSVMRKRIPLYSMREGAGLMSFCFMVTAASLLLGEIEAGSGSHFRTR 604
L+DT+DG + ++++PL R G G F AAS LG G+ H R R
Sbjct: 380 LLDTNDG-TCTKQQLPLRYGRAGGGYTMFVKTGGAASPALGGGGGGNHHHHRLR 432
>08_02_1019 - 23657175-23658047
Length = 290
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 189 FREGESRRAPSAGPMLPVAAVTDAPRALFHIPTHHQL-P*IRSPAAVEHSQQ 341
F ES GP P +AV+ A + + HHQ P R+PA H QQ
Sbjct: 108 FHRKESESPTGVGPAEP-SAVSPAAISAYGASPHHQFSPYYRTPAGYLHHQQ 158
>07_01_0975 + 8223269-8224354
Length = 361
Score = 29.1 bits (62), Expect = 4.7
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = -2
Query: 271 SARGASVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPR-----CPSGTPSMSPQKG 107
SA G S + TG G + G+ SPS P S+P P+G+P+ P G
Sbjct: 225 SAPGPSPSDDTG-YGGSSGSPSSSPSSSPSSSPSGSPSSSPSGSPSGSPAGSPAGGPTAG 283
Query: 106 SPASQP 89
PAS P
Sbjct: 284 GPASGP 289
>04_03_1015 - 21734381-21736534
Length = 717
Score = 29.1 bits (62), Expect = 4.7
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = -1
Query: 674 SWSPLLLFCWARSKPARAVT--SALGWCNFTSQPLTVPSQSNRQTVTLFPHNTRQSRTFV 501
SW+ ++ +P A++ SA+ C + +T+ S L H RQ +
Sbjct: 120 SWNAIISAYSRGEEPTEAISLFSAMNSCGVRPKDVTLASVLGCCAECLDLHGARQLHGHI 179
Query: 500 LKG---SNYIMGTARIDV 456
K SN I+GTA +DV
Sbjct: 180 AKRDFQSNVILGTALVDV 197
>03_06_0011 - 30995083-30995108,30995850-30996038,30996063-30998856
Length = 1002
Score = 29.1 bits (62), Expect = 4.7
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = -3
Query: 780 LLQIRLMDTSDGRSVMRKRIP--LYSMREGAGLMSFCFMVTAASLLLGEIEAGSGSHFRT 607
L +++L+D S R+++ RIP L RE L F ++LL G I G R
Sbjct: 196 LPKLKLLDLS--RNLLTGRIPSELGDCRELRSLQLF------SNLLEGSIPPEIGRLRRL 247
Query: 606 RLV*LHFTTANGPVTIEQTNCHSIS 532
+++ + NGPV +E NC +S
Sbjct: 248 QVLDISSNRLNGPVPMELGNCMDLS 272
>03_05_0118 + 20999241-20999597,20999800-20999895
Length = 150
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 841 APCRSSARTRAPPCTRCASSTPADTPDGHV 752
A CR+SAR R P R + S + PD V
Sbjct: 49 AGCRASARLRRPGAARTSGSAQEEEPDDEV 78
>03_02_0948 -
12645972-12646010,12646612-12646750,12646846-12647090,
12647184-12647505,12647781-12648005,12648185-12648351,
12648428-12648544,12648989-12649162,12649372-12649467,
12649624-12649840,12650267-12650385,12650478-12650670,
12651212-12651363,12651485-12651611,12651731-12651828
Length = 809
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = -3
Query: 555 QTNCHSISTQHTTVSYFCFERVQLYNG--NCPH*CR--FQPLERIRKRSNKSSECGNKLN 388
+ N H +S + TVS + + +L +G N P+ F+P R N+SS GN +
Sbjct: 99 RVNVHELSVEQLTVSEYLRFKEELVDGQYNDPYILELDFEPFNASVPRPNRSSSIGNGVQ 158
Query: 387 *ITR 376
+ R
Sbjct: 159 FLNR 162
>08_01_0625 + 5444547-5444912
Length = 121
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = -2
Query: 787 SSTPADTPDGHVRWAVGDEEAHPLVLDEGRRRSNVLLLHGHRCFSS 650
+S+P + R L+ RRS VLLL RCFSS
Sbjct: 30 TSSPREVGSARERGGTPPVPVKASALNRSARRSRVLLLPPRRCFSS 75
>04_04_0055 +
22403608-22403865,22403977-22404075,22404172-22404213,
22404350-22404479,22405118-22405219,22405960-22406066
Length = 245
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -2
Query: 739 GDEEAHPLVLDEGRRRSNVLLLHGHR 662
G+E A P EG RR L LHG R
Sbjct: 6 GEEGARPAAAAEGARRPRFLCLHGFR 31
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,678,512
Number of Sequences: 37544
Number of extensions: 593748
Number of successful extensions: 2105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2103
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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