Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1488
(845 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38013| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.072
SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.67
SB_3663| Best HMM Match : MBT (HMM E-Value=0) 31 1.6
SB_1177| Best HMM Match : PEARLI-4 (HMM E-Value=0.46) 30 2.7
SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15) 29 3.6
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58) 29 6.3
SB_159| Best HMM Match : TP2 (HMM E-Value=0.58) 29 6.3
SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45) 29 6.3
>SB_38013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 88
Score = 35.1 bits (77), Expect = 0.072
Identities = 13/22 (59%), Positives = 20/22 (90%)
Frame = +1
Query: 772 LQELRKHNVCTVVRVCEPSYDT 837
+Q+L+K++ TVVRVCEP+Y+T
Sbjct: 56 IQDLKKYDAHTVVRVCEPTYNT 77
Score = 33.1 bits (72), Expect = 0.29
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +2
Query: 692 PAPSLIEYKGMRFLITDRPSDVSI 763
P ++EYK M+FLITDRP++ ++
Sbjct: 14 PGAVMLEYKSMKFLITDRPTNSTL 37
>SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 31.9 bits (69), Expect = 0.67
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 472 LPALMSFSTTRTHPKAIKQKFRMWKQIKLNHSE 374
LP M T +T PK + Q FR +KQ++ H +
Sbjct: 40 LPPNMRLQTPKTGPKGVIQDFRRYKQLETEHKK 72
>SB_3663| Best HMM Match : MBT (HMM E-Value=0)
Length = 327
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 647 WARSKPARAVTSALGWCNFTSQPLTVPSQSNRQTVTLFPHNTRQS 513
WAR +R+++ A WCNFT PL P S+ + P ++ S
Sbjct: 119 WARFD-SRSISPAR-WCNFTGHPLQPPDPSSSADSSYSPSDSAAS 161
>SB_1177| Best HMM Match : PEARLI-4 (HMM E-Value=0.46)
Length = 576
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 721 DALPHHRPPIGRVHQAYLQELRKHNVCTVVRVCEPSYD 834
D P H P +AY+ +KHN+ TVVR+ + YD
Sbjct: 195 DGYPLHAP------EAYIPYFKKHNISTVVRLNKKLYD 226
>SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15)
Length = 333
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -2
Query: 208 LLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSP 101
L++P K+F++ CV PG++ R P+ PS++ +P
Sbjct: 207 LVAPITKYFIYGCVTPGAS-RTPTLVPSINGGNTTP 241
>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1741
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -2
Query: 277 WNSARGASVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSG 134
W AR V A T ++ PAD +L+ SPSR CV T C +G
Sbjct: 745 WGRAR-TLVFAWTYNVNPADASLIASPSRS-----CVHGNVTLTCTAG 786
>SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 664
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 499 KTKVRDCRVLCGNRVTVCLFDCDG--TVSGCEVKLHQPSAE 615
+TK R C + G TVC+F C+G V G + QP+ E
Sbjct: 459 RTKTRKCTTVVG---TVCVFGCEGGRRVVGSTERRCQPTGE 496
>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
Length = 429
Score = 28.7 bits (61), Expect = 6.3
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Frame = -2
Query: 286 VGMWNSARGASVTAATGSMGPADGALLLSPSRKHFLF-ICVEPGSTPRCPSGTPSMSPQK 110
+ + N RG T++ G + +S S L + P ++ R P G+ S+SP
Sbjct: 257 IALNNPLRGRLSTSSLGETFSHSSSRSISVSSVSSLSSVSSSPRTSRRSPPGSGSLSPSV 316
Query: 109 GSPASQP-YTLNRN*TVAAVS-SRRNSPHTQKRVHRTE 2
SP+ P + N N + S + +PH++ +RT+
Sbjct: 317 FSPSPCPIWEENYNTSDDFASHAESKAPHSEINQYRTD 354
>SB_159| Best HMM Match : TP2 (HMM E-Value=0.58)
Length = 429
Score = 28.7 bits (61), Expect = 6.3
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Frame = -2
Query: 286 VGMWNSARGASVTAATGSMGPADGALLLSPSRKHFLF-ICVEPGSTPRCPSGTPSMSPQK 110
+ + N RG T++ G + +S S L + P ++ R P G+ S+SP
Sbjct: 257 IALNNPLRGRLSTSSLGETFSHSSSRSISVSSVSSLSSVSSSPRTSRRSPPGSGSLSPSV 316
Query: 109 GSPASQP-YTLNRN*TVAAVS-SRRNSPHTQKRVHRTE 2
SP+ P + N N + S + +PH++ +RT+
Sbjct: 317 FSPSPCPIWEENYNTSDDFASHAESKAPHSEINQYRTD 354
>SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)
Length = 671
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 169 VEPGSTPRCPSGTPSMSPQKGSPASQPYT 83
+ P S P PS +P+ + GSP QP++
Sbjct: 77 LNPTSDPEIPSSSPNDNHLPGSPGEQPFS 105
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,841,047
Number of Sequences: 59808
Number of extensions: 665974
Number of successful extensions: 1914
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1913
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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