Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1488
         (845 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42846-3|AAA83602.1|  190|Caenorhabditis elegans C. elegans PRL-...    42   7e-04
AF063401-1|AAC17103.1|  190|Caenorhabditis elegans putative pren...    42   7e-04
AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    33   0.19 
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    33   0.19 
Z81567-5|CAB04588.2|  154|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    30   2.4  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    30   2.4  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    30   2.4  
Z82278-10|CAC15860.2|  390|Caenorhabditis elegans Hypothetical p...    29   4.2  
AL132943-14|CAC14395.2|  390|Caenorhabditis elegans Hypothetical...    29   4.2  
Z83108-2|CAB05510.1|  820|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z75527-5|CAA99776.1|  340|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z81069-6|CAB02993.1|  237|Caenorhabditis elegans Hypothetical pr...    28   9.6  
AF220526-1|AAF43009.1|  332|Caenorhabditis elegans DNAse II homo...    28   9.6  

>U42846-3|AAA83602.1|  190|Caenorhabditis elegans C. elegans PRL-1
           protein protein.
          Length = 190

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 16/25 (64%), Positives = 20/25 (80%)
 Frame = +1

Query: 763 QAYLQELRKHNVCTVVRVCEPSYDT 837
           Q+Y++EL KH    VVRVCEP+YDT
Sbjct: 46  QSYIEELEKHGARAVVRVCEPTYDT 70



 Score = 35.5 bits (78), Expect = 0.048
 Identities = 16/26 (61%), Positives = 21/26 (80%)
 Frame = +2

Query: 689 RPAPSLIEYKGMRFLITDRPSDVSIR 766
           +PAPS I +  MRFLITDRP++ SI+
Sbjct: 21  KPAPSEIAWGKMRFLITDRPNNSSIQ 46


>AF063401-1|AAC17103.1|  190|Caenorhabditis elegans putative
           prenylated protein tyrosinephosphatase protein.
          Length = 190

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 16/25 (64%), Positives = 20/25 (80%)
 Frame = +1

Query: 763 QAYLQELRKHNVCTVVRVCEPSYDT 837
           Q+Y++EL KH    VVRVCEP+YDT
Sbjct: 46  QSYIEELEKHGARAVVRVCEPTYDT 70



 Score = 35.5 bits (78), Expect = 0.048
 Identities = 16/26 (61%), Positives = 21/26 (80%)
 Frame = +2

Query: 689 RPAPSLIEYKGMRFLITDRPSDVSIR 766
           +PAPS I +  MRFLITDRP++ SI+
Sbjct: 21  KPAPSEIAWGKMRFLITDRPNNSSIQ 46


>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -2

Query: 229 GPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPA 98
           GPA GA   +PSR     +  +P +T R P+ TP+  P + +P+
Sbjct: 14  GPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPS 57


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -2

Query: 229 GPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPA 98
           GPA GA   +PSR     +  +P +T R P+ TP+  P + +P+
Sbjct: 143 GPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPS 186


>Z81567-5|CAB04588.2|  154|Caenorhabditis elegans Hypothetical
           protein K08C9.7 protein.
          Length = 154

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -2

Query: 202 SPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPASQPYTLNR 74
           SPS K+F     E G   R P+G P++S Q+ +  +QP TL +
Sbjct: 107 SPSPKYFKID--ENGKISRLPTGIPTVSIQREAFMTQPTTLRK 147


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = -2

Query: 274 NSARGASVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPS-MSPQKGSPA 98
           + + G++VT   GS      +  ++ S      + V PGS+    S TPS  S   G+ +
Sbjct: 145 SGSTGSTVTVVPGSSSTFASSTPIASSSSPGSTVTVAPGSSSTYGSSTPSASSSSSGTMS 204

Query: 97  SQPYTLNRN*TVAAVSS 47
           +   +     TVA VSS
Sbjct: 205 TNSGSTGSTVTVAPVSS 221


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = -2

Query: 274 NSARGASVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPS-MSPQKGSPA 98
           + + G++VT   GS      +  ++ S      + V PGS+    S TPS  S   G+ +
Sbjct: 352 SGSTGSTVTVVPGSSSTFASSTPIASSSSPGSTVTVAPGSSSTYGSSTPSASSSSSGTMS 411

Query: 97  SQPYTLNRN*TVAAVSS 47
           +   +     TVA VSS
Sbjct: 412 TNSGSTGSTVTVAPVSS 428


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = -2

Query: 274 NSARGASVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPS-MSPQKGSPA 98
           + + G++VT   GS      +  ++ S      + V PGS+    S TPS  S   G+ +
Sbjct: 352 SGSTGSTVTVVPGSSSTFASSTPIASSSSPGSTVTVAPGSSSTYGSSTPSASSSSSGTMS 411

Query: 97  SQPYTLNRN*TVAAVSS 47
           +   +     TVA VSS
Sbjct: 412 TNSGSTGSTVTVAPVSS 428


>Z82278-10|CAC15860.2|  390|Caenorhabditis elegans Hypothetical
           protein Y116F11B.2 protein.
          Length = 390

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = -3

Query: 690 LMSFCFMVTAASLLLGEIEAGSGSHFRTRLV*LHFTTANGPVTIEQTNCHSISTQHTTVS 511
           LM  C ++   + + G I +     F T  V    T    PVT   T   +     TT +
Sbjct: 5   LMLICIILFYVNTVSGCIPSQEIEPFTTTAVPTTTTIPIDPVTTTTTTTTTTEEPTTTTT 64

Query: 510 Y-FCFERVQLYNGNC 469
             FC   +Q+YN +C
Sbjct: 65  APFCANCLQVYNNDC 79


>AL132943-14|CAC14395.2|  390|Caenorhabditis elegans Hypothetical
           protein Y116F11B.2 protein.
          Length = 390

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = -3

Query: 690 LMSFCFMVTAASLLLGEIEAGSGSHFRTRLV*LHFTTANGPVTIEQTNCHSISTQHTTVS 511
           LM  C ++   + + G I +     F T  V    T    PVT   T   +     TT +
Sbjct: 5   LMLICIILFYVNTVSGCIPSQEIEPFTTTAVPTTTTIPIDPVTTTTTTTTTTEEPTTTTT 64

Query: 510 Y-FCFERVQLYNGNC 469
             FC   +Q+YN +C
Sbjct: 65  APFCANCLQVYNNDC 79


>Z83108-2|CAB05510.1|  820|Caenorhabditis elegans Hypothetical
           protein F44E5.2 protein.
          Length = 820

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +1

Query: 7   CGAHVFACVVNFFG-CSRLPP 66
           C  H+F C + FFG CSR  P
Sbjct: 555 CDRHIFRCSIPFFGFCSRCEP 575


>Z75527-5|CAA99776.1|  340|Caenorhabditis elegans Hypothetical
           protein C15C8.5 protein.
          Length = 340

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -3

Query: 339 VGCAQQQRGSEFKVTDDG*VCGTVREVRQSP-PLP 238
           VGC     G+   V DDG +C  V    Q+  PLP
Sbjct: 73  VGCRTNHLGASLCVCDDGPLCNRVERAEQTARPLP 107


>Z81069-6|CAB02993.1|  237|Caenorhabditis elegans Hypothetical
           protein F25H9.6 protein.
          Length = 237

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 721 DALPHHRPPIGRVHQAYLQELRKHNVCTVV 810
           + +P  RPP+ R H+    E  KHN+  ++
Sbjct: 20  EIMPEIRPPLTRTHKIVRDESGKHNLLLIL 49


>AF220526-1|AAF43009.1|  332|Caenorhabditis elegans DNAse II homolog
           F09G8.2 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -2

Query: 835 CRSSARTRAPPCTRCASSTPADTPDGHVRWAVGDEEAHPLVLDEGRRRSNVLLLHG 668
           C S+++T      R      A + D H +WAV + + +P+V  E   R    L  G
Sbjct: 238 CTSTSQTHDVTEMRVTGLNFASSKD-HSKWAVSNSQTNPIVCFEDMNRQKSQLKRG 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,781,962
Number of Sequences: 27780
Number of extensions: 473388
Number of successful extensions: 1531
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1530
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)