Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1488
         (845 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00...    29   3.9  
At2g37520.1 68415.m04601 PHD finger family protein contains Pfam...    28   6.8  
At5g43110.1 68418.m05263 pumilio/Puf RNA-binding domain-containi...    28   9.0  

>At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 571

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = -1

Query: 548 TVTLFPHNTRQSRTFVLKGSNYIMGTARIDVVFNHSNASESDQTKVQNVETN*IKSLGNI 369
           T  LFP  ++     +L+  N ++   +    + H N  E +Q    ++E +  K L N+
Sbjct: 232 TGNLFPTRSKYDEAMMLERRNMLLKMLKFGGNWKHINLEEDEQLCYNHIEIDIKKLLENL 291

Query: 368 G 366
           G
Sbjct: 292 G 292


>At2g37520.1 68415.m04601 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 854

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = -3

Query: 342 IVGCAQQQRGSEFKVTDDG*VCGTVREVRQSPPLPAAWVQRMALSCSRLHGNTSCLFVLS 163
           +V C+    GSE  V+DD  V G+ +  + S  LP+ +V  +    S   G T   F LS
Sbjct: 80  LVECSGSDFGSEETVSDDASVVGSSQTEQSSDVLPSRFVLEIPKHLSST-GITKITFKLS 138


>At5g43110.1 68418.m05263 pumilio/Puf RNA-binding domain-containing
           protein contains similarity to RNA-binding protein
          Length = 518

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 718 GDALPHHRPPIGRVHQAYLQELRKHNVCTVVRV 816
           GD   +  PP+G  H   L+EL++HN    +R+
Sbjct: 103 GDDNGYLLPPMGSHHHRELEELQRHNYLNQLRM 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,453,532
Number of Sequences: 28952
Number of extensions: 426229
Number of successful extensions: 1285
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)