Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1486
         (767 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0F8W3 Cluster: Putative uncharacterized protein; n=1; ...    33   5.9  
UniRef50_A4M0I3 Cluster: Putative uncharacterized protein; n=2; ...    33   5.9  
UniRef50_Q23F49 Cluster: Putative uncharacterized protein; n=1; ...    33   7.8  

>UniRef50_Q0F8W3 Cluster: Putative uncharacterized protein; n=1;
           alpha proteobacterium HTCC2255|Rep: Putative
           uncharacterized protein - alpha proteobacterium HTCC2255
          Length = 887

 Score = 33.5 bits (73), Expect = 5.9
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
 Frame = -1

Query: 293 YWH--FVFSYNGPILQNVNLLMRVSYTCINMTH*NFKLLIESI 171
           +WH  FV SY+G I QNV+L+ +  +T   + H NF+ L ++I
Sbjct: 177 FWHNHFVSSYSG-INQNVHLIAKQHWTFRQLGHTNFRALAKAI 218


>UniRef50_A4M0I3 Cluster: Putative uncharacterized protein; n=2;
           Geobacter bemidjiensis Bem|Rep: Putative uncharacterized
           protein - Geobacter bemidjiensis Bem
          Length = 289

 Score = 33.5 bits (73), Expect = 5.9
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = -3

Query: 330 QFTKDKYIICGIILALCLFVQWTYFTKCKLTNEGQLYLYKHDALEF*AFNRINMAYRVRF 151
           Q  KD+ +  GI+   C    W     C + N   L +   D+       ++N AY  +F
Sbjct: 28  QVDKDRTVFLGILAKCCNLFNWVCHAYCLMNNHYHLVIETLDSTLSRGMRQLNGAYTQKF 87

Query: 150 NF 145
           N+
Sbjct: 88  NW 89


>UniRef50_Q23F49 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 533

 Score = 33.1 bits (72), Expect = 7.8
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
 Frame = -3

Query: 681 DVVIQNVNHIF--IKESSIVK*MSI-NKIC-NLYLNDNLKPKKEKRDVTIQ*IGISNILT 514
           D+VI+++      +   S+ K   I ++IC N+   D+LK   + R ++ + +  SN+LT
Sbjct: 118 DIVIKSIQESISSVSSYSLKKVFEIYSQICKNINSADSLKNSTQTRQLSFKIL--SNMLT 175

Query: 513 RIVLLEQ*NYNQH 475
            +VL +  NYNQ+
Sbjct: 176 NLVLAQSKNYNQY 188


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 576,213,814
Number of Sequences: 1657284
Number of extensions: 9924947
Number of successful extensions: 16681
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16678
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64204279620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)