Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1486
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0084 - 15041261-15041437,15041625-15041765,15042857-150429...    29   4.1  

>02_03_0084 -
           15041261-15041437,15041625-15041765,15042857-15042946,
           15043111-15043201,15043953-15044155,15045361-15045438,
           15045535-15045651,15046111-15046161,15046405-15046500,
           15046726-15046742,15046938-15047064,15050585-15050681,
           15051565-15051638,15051910-15051993,15052099-15052290,
           15054191-15054319,15055607-15055639,15055747-15055843,
           15055940-15055990,15057494-15057564,15058305-15058455,
           15058625-15058703,15059265-15059346,15060335-15060335,
           15060565-15060620,15060969-15061018,15061511-15061580
          Length = 834

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 330 QFTKDKYIICGIILALCLFVQWTYFTKC 247
           Q T+D+Y+I G ++ L    Q  Y+ KC
Sbjct: 19  QITRDRYLIFGCLVCLVTCEQKVYYLKC 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,246,632
Number of Sequences: 37544
Number of extensions: 232643
Number of successful extensions: 286
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)