Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1486
(767 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49525| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=5.2e-10) 31 1.4
SB_56011| Best HMM Match : Exo_endo_phos (HMM E-Value=0.13) 28 9.5
SB_55435| Best HMM Match : RVT_1 (HMM E-Value=7.9e-22) 28 9.5
SB_46984| Best HMM Match : Exo_endo_phos (HMM E-Value=4.2e-09) 28 9.5
SB_46241| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_43221| Best HMM Match : PHF5 (HMM E-Value=2) 28 9.5
SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0) 28 9.5
SB_41253| Best HMM Match : Exo_endo_phos (HMM E-Value=4.5e-09) 28 9.5
SB_29894| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_25693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012) 28 9.5
SB_15701| Best HMM Match : MT-A70 (HMM E-Value=1.6e-17) 28 9.5
SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023) 28 9.5
SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_24634| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00054) 28 9.5
SB_9246| Best HMM Match : RHS_repeat (HMM E-Value=5.5e-06) 28 9.5
>SB_49525| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=5.2e-10)
Length = 779
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/20 (60%), Positives = 17/20 (85%), Gaps = 1/20 (5%)
Frame = +1
Query: 427 RNCINTL-LRVCLHTCTMLI 483
R+CIN L +RVC+H CT+L+
Sbjct: 683 RSCINKLFIRVCVHKCTLLM 702
>SB_56011| Best HMM Match : Exo_endo_phos (HMM E-Value=0.13)
Length = 307
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 531 FQFIEL*HPSFPFLVSNCHLNINYK 605
FQF+++ HP P + +CH+ N K
Sbjct: 211 FQFLKI-HPLLPHISDHCHITYNIK 234
>SB_55435| Best HMM Match : RVT_1 (HMM E-Value=7.9e-22)
Length = 726
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 531 FQFIEL*HPSFPFLVSNCHLNINYK 605
FQF+++ HP P + +CH+ N K
Sbjct: 281 FQFLKI-HPLLPHISDHCHITYNIK 304
>SB_46984| Best HMM Match : Exo_endo_phos (HMM E-Value=4.2e-09)
Length = 476
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 531 FQFIEL*HPSFPFLVSNCHLNINYK 605
FQF+++ HP P + +CH+ N K
Sbjct: 262 FQFLKI-HPLLPHISDHCHITYNIK 285
>SB_46241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 531 FQFIEL*HPSFPFLVSNCHLNINYK 605
FQF+++ HP P + +CH+ N K
Sbjct: 467 FQFLKI-HPLLPHISDHCHITYNIK 490
>SB_43221| Best HMM Match : PHF5 (HMM E-Value=2)
Length = 361
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 531 FQFIEL*HPSFPFLVSNCHLNINYK 605
FQF+++ HP P + +CH+ N K
Sbjct: 118 FQFLKI-HPLLPHISDHCHITYNIK 141
>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1858
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 531 FQFIEL*HPSFPFLVSNCHLNINYK 605
FQF+++ HP P + +CH+ N K
Sbjct: 1032 FQFLKI-HPLLPHISDHCHITYNIK 1055
>SB_41253| Best HMM Match : Exo_endo_phos (HMM E-Value=4.5e-09)
Length = 404
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 531 FQFIEL*HPSFPFLVSNCHLNINYK 605
FQF+++ HP P + +CH+ N K
Sbjct: 262 FQFLKI-HPLLPHISDHCHITYNIK 285
>SB_29894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 531 FQFIEL*HPSFPFLVSNCHLNINYK 605
FQF+++ HP P + +CH+ N K
Sbjct: 262 FQFLKI-HPLLPHISDHCHITYNIK 285
>SB_25693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012)
Length = 826
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 531 FQFIEL*HPSFPFLVSNCHLNINYK 605
FQF+++ HP P + +CH+ N K
Sbjct: 607 FQFLKI-HPLLPHISDHCHITYNIK 630
>SB_15701| Best HMM Match : MT-A70 (HMM E-Value=1.6e-17)
Length = 1178
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 531 FQFIEL*HPSFPFLVSNCHLNINYK 605
FQF+++ HP P + +CH+ N K
Sbjct: 976 FQFLKI-HPLLPHISDHCHITYNIK 999
>SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023)
Length = 836
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 531 FQFIEL*HPSFPFLVSNCHLNINYK 605
FQF+++ HP P + +CH+ N K
Sbjct: 389 FQFLKI-HPLLPHISDHCHITYNIK 412
>SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1317
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 531 FQFIEL*HPSFPFLVSNCHLNINYK 605
FQF+++ HP P + +CH+ N K
Sbjct: 735 FQFLKI-HPLLPHISDHCHITYNIK 758
>SB_24634| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00054)
Length = 1012
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 531 FQFIEL*HPSFPFLVSNCHLNINYK 605
FQF+++ HP P + +CH+ N K
Sbjct: 853 FQFLKI-HPLLPHISDHCHITYNIK 876
>SB_9246| Best HMM Match : RHS_repeat (HMM E-Value=5.5e-06)
Length = 530
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 531 FQFIEL*HPSFPFLVSNCHLNINYK 605
FQF+++ HP P + +CH+ N K
Sbjct: 388 FQFLKI-HPLLPHISDHCHITYNIK 411
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,963,639
Number of Sequences: 59808
Number of extensions: 313849
Number of successful extensions: 537
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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