Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1485
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50882| Best HMM Match : Metallophos (HMM E-Value=8.00001e-41)      189   2e-48
SB_49199| Best HMM Match : Metallophos (HMM E-Value=2.5e-25)          104   8e-23
SB_31501| Best HMM Match : No HMM Matches (HMM E-Value=.)              99   4e-21
SB_38314| Best HMM Match : Metallophos (HMM E-Value=5.1e-07)           83   2e-16
SB_52368| Best HMM Match : No HMM Matches (HMM E-Value=.)              72   4e-13
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)           54   1e-07
SB_49265| Best HMM Match : efhand (HMM E-Value=0.68)                   50   1e-06
SB_1044| Best HMM Match : Metallophos (HMM E-Value=5.8e-16)            44   1e-04
SB_36816| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.094
SB_18192| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_7350| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_17257| Best HMM Match : rve (HMM E-Value=8.3e-08)                   29   2.7  
SB_38634| Best HMM Match : DUF164 (HMM E-Value=0.6)                    28   6.2  
SB_40600| Best HMM Match : DUF667 (HMM E-Value=0.35)                   28   6.2  
SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4)                 28   8.1  
SB_3531| Best HMM Match : Cytomega_US3 (HMM E-Value=6.7)               28   8.1  

>SB_50882| Best HMM Match : Metallophos (HMM E-Value=8.00001e-41)
          Length = 293

 Score =  189 bits (461), Expect = 2e-48
 Identities = 85/85 (100%), Positives = 85/85 (100%)
 Frame = +1

Query: 256 LLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYK 435
           LLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYK
Sbjct: 52  LLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYK 111

Query: 436 IKYPENFFLLRGNHECASINRIYGF 510
           IKYPENFFLLRGNHECASINRIYGF
Sbjct: 112 IKYPENFFLLRGNHECASINRIYGF 136



 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 37/38 (97%), Positives = 38/38 (100%)
 Frame = +3

Query: 510 YDECKRRYNIKLWKTFTDCFNCLPVAAIVDEKIFCCHG 623
           YDECKRRYNIKLWKTFTDCFNCLPVAAI+DEKIFCCHG
Sbjct: 137 YDECKRRYNIKLWKTFTDCFNCLPVAAILDEKIFCCHG 174



 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 35/54 (64%), Positives = 46/54 (85%)
 Frame = +2

Query: 110 DTDELNIDNVIKKLLKVRGEKPGMNVQLTEIEIKGLCLKSREIFLSQPNYLNLK 271
           + ++LN+D++I +LL+VRG +PG NVQLTE EI+GLCLKSREIFLSQP  L L+
Sbjct: 3   EPEKLNVDSIISRLLEVRGSRPGKNVQLTEAEIRGLCLKSREIFLSQPILLELE 56


>SB_49199| Best HMM Match : Metallophos (HMM E-Value=2.5e-25)
          Length = 173

 Score =  104 bits (249), Expect = 8e-23
 Identities = 44/82 (53%), Positives = 58/82 (70%)
 Frame = +1

Query: 265 LEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKY 444
           + +P+ +CGDIHGQ+YDL  LF  GG  P ++Y+F+GD+VDRG  SLET   LL  K K+
Sbjct: 42  VSSPVTVCGDIHGQFYDLEELFRTGGQVPNTSYVFMGDFVDRGYYSLETFTRLLTLKAKW 101

Query: 445 PENFFLLRGNHECASINRIYGF 510
           P+   LLRGNHE   I ++YGF
Sbjct: 102 PDRITLLRGNHESRQITQVYGF 123



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
 Frame = +3

Query: 510 YDECKRRY-NIKLWKTFTDCFNCLPVAAIVDEKIFCCHGGLSPDLQAMEQ 656
           YDEC+ +Y N   W+     F+ L VAAI+D ++ C HGGLSPD++ ++Q
Sbjct: 124 YDECQSKYGNANAWRYCCKVFDLLTVAAIIDGQVLCVHGGLSPDIKTIDQ 173


>SB_31501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1150

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 46/85 (54%), Positives = 58/85 (68%)
 Frame = +1

Query: 256 LLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYK 435
           +LE++AP+ +CGDIHGQ+YDL++LFE GG P  + YLFLGDYVDRG  S+E  CL     
Sbjct: 76  MLEVDAPITVCGDIHGQFYDLVKLFEVGGSPATTRYLFLGDYVDRGYFSIE--CL----- 128

Query: 436 IKYPENFFLLRGNHECASINRIYGF 510
             Y    FLLRGNHEC  +   + F
Sbjct: 129 --YTNTLFLLRGNHECRHLTEYFTF 151



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 16/51 (31%), Positives = 36/51 (70%)
 Frame = +3

Query: 522 KRRYNIKLWKTFTDCFNCLPVAAIVDEKIFCCHGGLSPDLQAMEQIRRIMR 674
           K +Y+  ++    + F+CLP+AA+++++  C HGGLSP++  ++ ++++ R
Sbjct: 188 KIKYSEAVYDACMESFDCLPLAALMNQQFLCVHGGLSPEIHTLDDVKKLDR 238


>SB_38314| Best HMM Match : Metallophos (HMM E-Value=5.1e-07)
          Length = 199

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 32/58 (55%), Positives = 46/58 (79%)
 Frame = +1

Query: 262 ELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYK 435
           E++ P+ +CGD+HGQ++DL+ LF  GG  P++NYLF+GDYVDRG  S+ET+ LL+  K
Sbjct: 48  EVKCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVTLK 105


>SB_52368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 35/64 (54%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
 Frame = +1

Query: 211 RAMFEIKRNI-LVTA*LLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVD 387
           R + ++ R I L    LLE+ AP+ I GDIHGQY DLLR F+  G+PP  +Y+FLGDYVD
Sbjct: 38  RQICQVSREIFLQQPMLLEIGAPINIFGDIHGQYEDLLRHFDKLGYPPNESYIFLGDYVD 97

Query: 388 RGKQ 399
           R K+
Sbjct: 98  RPKR 101



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 24/49 (48%), Positives = 34/49 (69%)
 Frame = +2

Query: 122 LNIDNVIKKLLKVRGEKPGMNVQLTEIEIKGLCLKSREIFLSQPNYLNL 268
           L++DNVI++LL  + + PG  VQL E +I+ +C  SREIFL QP  L +
Sbjct: 10  LDVDNVIEQLLSYK-KNPGKQVQLPEAQIRQICQVSREIFLQQPMLLEI 57


>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
          Length = 417

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 24/48 (50%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
 Frame = +1

Query: 340 GFP-PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHE 480
           G P PE+ Y+F GD VDRG +S+E   +L A+ I YP   ++ RGNHE
Sbjct: 2   GLPSPENPYIFNGDLVDRGPRSIEICIILFAFTILYPNGVYINRGNHE 49



 Score = 36.7 bits (81), Expect = 0.018
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 549 KTFTDCFNCLPVAAIVDEKIFCCHGGLS--PDLQAMEQIRR 665
           +TF      LP+A IV+ KIF  HGG+S   DL  +E+I R
Sbjct: 77  RTFRKYLGWLPLATIVNNKIFVAHGGISNITDLDIIERIDR 117


>SB_49265| Best HMM Match : efhand (HMM E-Value=0.68)
          Length = 720

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 4/55 (7%)
 Frame = +1

Query: 256 LLELEAPLKICGDIHGQYYDLL----RLFEYGGFPPESNYLFLGDYVDRGKQSLE 408
           +L +++P+ + GD+HG + DL+     L+  G     SN+LFLGDYVDRG+  +E
Sbjct: 666 MLRVQSPVYVLGDLHGNFRDLVCFEKLLWRMGPVLTPSNFLFLGDYVDRGENGVE 720


>SB_1044| Best HMM Match : Metallophos (HMM E-Value=5.8e-16)
          Length = 250

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 24/66 (36%), Positives = 34/66 (51%)
 Frame = +1

Query: 283 ICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFL 462
           + GDIHG    L +LFE          +FLGDYVD   +S  TI  L+  +I    +   
Sbjct: 7   VFGDIHGGLRALQQLFERAEITINDKLIFLGDYVDGWSESAATIQFLI--EIAEKHDCIF 64

Query: 463 LRGNHE 480
           ++GNH+
Sbjct: 65  IKGNHD 70


>SB_36816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 34.3 bits (75), Expect = 0.094
 Identities = 21/50 (42%), Positives = 28/50 (56%)
 Frame = +3

Query: 537 IKLWKTFTDCFNCLPVAAIVDEKIFCCHGGLSPDLQAMEQIRRIMRPTDV 686
           I+L +  T  F+  P +A    K         P++ +MEQIRRIMRPTDV
Sbjct: 23  IQLQQASTAIFDYAPYSACAQRKTLA---NFPPNM-SMEQIRRIMRPTDV 68


>SB_18192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +3

Query: 504 WVYDECKR----RYNIKLWKTFTDCFNCLPVAAIVDEKIFCCHG 623
           WV  EC R     Y+  + KTF DC   LPV  +VD+     HG
Sbjct: 180 WVEGECVRAMGVHYHYNISKTF-DCDYALPVFLLVDKTSHKVHG 222


>SB_7350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +3

Query: 504 WVYDECKR----RYNIKLWKTFTDCFNCLPVAAIVDEKIFCCHG 623
           WV  EC R     Y+  + KTF DC   LPV  +VD+     HG
Sbjct: 63  WVEGECVRAMGVHYHYNISKTF-DCDYALPVFLLVDKTSHKVHG 105


>SB_17257| Best HMM Match : rve (HMM E-Value=8.3e-08)
          Length = 962

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
 Frame = +3

Query: 393 QAVVGNNMPAPRLQD*ISR-----------EF--LSFTRKPRVCQHQ*DLWVY-DECKRR 530
           +A++GN+ P P +++   +           +F  LS+TR     QH   L    +E +RR
Sbjct: 468 KAIIGNHYPTPTIEEVSPKLTNAKKSMQKMDFCKLSWTRHQATSQHSRHLMAAPEEFQRR 527

Query: 531 YNIKLWKTFTDCFNCLP-VAAIVDEKIFCCHGGLSPDLQAMEQIRRIMRPTDV 686
            N        +C   LP +AA+ D+ I     G+S D + +E I  + +P ++
Sbjct: 528 IN--------ECIEGLPNIAAVHDDIIIYGTEGISADPEKVEAICEMQQPVNI 572


>SB_38634| Best HMM Match : DUF164 (HMM E-Value=0.6)
          Length = 493

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 385 DRGKQSLETICLLLAYKIKYPENFFLLRGNHECA 486
           D  KQS  T+C+LL Y+ KY E  + +  N EC+
Sbjct: 444 DTTKQSRRTVCMLL-YRAKYIEGCY-ISVNTECS 475


>SB_40600| Best HMM Match : DUF667 (HMM E-Value=0.35)
          Length = 449

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +3

Query: 465 TRKPRVCQHQ*DLWVYDECKRRYNIKLWKTFTDCFN--CLPVAAIVDEKIFCCHGGLSPD 638
           +R P   +H  +L  + E  +R NI  +      F+  CLP+   V E+     G +SPD
Sbjct: 101 SRSPLPEEHDSNLQSFLEAAKRKNI-CYNNDKSIFSTRCLPILGYVVEE-----GNISPD 154

Query: 639 LQAMEQIRRIMRPTD 683
            + +  +R +  P+D
Sbjct: 155 PERLRPLRELPVPSD 169


>SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4)
          Length = 242

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 406 PTTACHGPHSLRGRDSWTPEGSHHTQTTLRGH 311
           PT   HGPH+     +WTP G  HT  T   H
Sbjct: 202 PTRTPHGPHT---DPTWTPHGP-HTDPTRNPH 229


>SB_3531| Best HMM Match : Cytomega_US3 (HMM E-Value=6.7)
          Length = 519

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 6/16 (37%), Positives = 14/16 (87%)
 Frame = +3

Query: 576 LPVAAIVDEKIFCCHG 623
           +P++ ++D+++FCC G
Sbjct: 71  VPISVVLDDRVFCCQG 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,019,682
Number of Sequences: 59808
Number of extensions: 456080
Number of successful extensions: 1398
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)