Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1482
(614 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 3.8
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 3.8
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 26 3.8
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 3.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 3.8
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 3.8
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 26 5.0
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma... 25 6.6
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 6.6
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 25 6.6
SPAC24B11.08c |||COPII-coated vesicle component Erv46|Schizosacc... 25 8.7
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 502 RTTIDGPSHKMEQFLKRNYGVERLVRQNN 588
RT G +HK Q +N G E L ++NN
Sbjct: 193 RTASYGKTHKRFQLQNKNLGKESLSKKNN 221
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 502 RTTIDGPSHKMEQFLKRNYGVERLVRQNN 588
RT G +HK Q +N G E L ++NN
Sbjct: 193 RTASYGKTHKRFQLQNKNLGKESLSKKNN 221
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = -2
Query: 286 DIHNMRWAEANFSPVVITRLRPCAADEYSPRTSISFDRLSCSILTVLMFPSKV 128
++HN ++ S ++ L+ + E P ++DR C L ++F + V
Sbjct: 1063 ELHNSAYSLDAISQNLLPMLKDLHSKELLPAICFNYDRQECEYLAEIVFKTLV 1115
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 502 RTTIDGPSHKMEQFLKRNYGVERLVRQNN 588
RT G +HK Q +N G E L ++NN
Sbjct: 193 RTASYGKTHKRFQLQNKNLGKESLSKKNN 221
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +3
Query: 108 DYNLMTDTFEGNIRTVRMLQDSLSKLIDVLGEYSSAAQGLNRVITT 245
D + + D+ ++RT+R L+DS++ L S+ + L V+T+
Sbjct: 1633 DLSNIKDSLSEDLRTLRSLEDSVASLQKECKIKSNTVESLQDVLTS 1678
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 502 RTTIDGPSHKMEQFLKRNYGVERLVRQNN 588
RT G +HK Q +N G E L ++NN
Sbjct: 193 RTASYGKTHKRFQLQNKNLGKESLSKKNN 221
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 312 PFFASLSLRIYTTCDGQRRI 253
PF + + ++TTC+G+RRI
Sbjct: 625 PFVSFQTAMLHTTCNGERRI 644
>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 242 YWGKIRLCPSHVVYILKDKDAKNGEGEAV 328
Y G+ L PS + Y+L NGEG ++
Sbjct: 131 YPGEAPLPPSSIGYVLPPSSLANGEGSSM 159
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 203 IFISCTRPQPCDHYWGKIRLC 265
I +S RP C YW RLC
Sbjct: 714 IVLSTMRPYLCSIYWAGSRLC 734
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.4 bits (53), Expect = 6.6
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 27 LYKFVEICTMEWMVPVNEML 86
LYK +E C M++ +P+ +L
Sbjct: 714 LYKILEACFMQFRIPIQHVL 733
>SPAC24B11.08c |||COPII-coated vesicle component
Erv46|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 8.7
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = -2
Query: 364 QKQVLATNLQHADCLALTVFCILVFKDIHNMRWAEANFSPVVITR---LRPCAADEYSPR 194
QK V ++ A +T+ L+ I M W N+ V+ + P D
Sbjct: 14 QKTVEDARIKTASGGLITLVSGLIVIFIVLMEWI--NYRRVIAVHEIIVNPSHGDRMEIN 71
Query: 193 TSISFDRLSCSILTV 149
+I+F R+ C ILTV
Sbjct: 72 FNITFPRIPCQILTV 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,531
Number of Sequences: 5004
Number of extensions: 47319
Number of successful extensions: 116
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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