Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1482
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0007 - 18324969-18325063,18326580-18326745,18327078-183272...    31   0.96 
11_06_0383 + 22965599-22966090                                         30   1.7  
07_01_0173 - 1212858-1213805,1214982-1215642,1215699-1215724,121...    29   2.9  
03_06_0614 - 35099225-35099461,35099545-35099694,35099919-351000...    29   3.9  
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751...    27   8.9  
03_05_0617 + 26163161-26163595,26163678-26164202                       27   8.9  
02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,362...    27   8.9  
01_01_1115 + 8828544-8828620,8829608-8829779,8829873-8830183,883...    27   8.9  

>11_05_0007 -
           18324969-18325063,18326580-18326745,18327078-18327275,
           18327377-18327643,18328070-18328129,18328767-18329033,
           18329156-18329359,18329441-18331496,18332517-18333358
          Length = 1384

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -2

Query: 568 APRRSCASGTAPSCARARRW*CVDVALRVLEHEIEKFLPASGALAVADHVEV 413
           APRR C  G A    R+RR   + V +  ++ E+E+         + DHV V
Sbjct: 99  APRRPCCIGFAHGHGRSRRRAAIVVEIERIKKEVEEVSRRRERYRIDDHVVV 150


>11_06_0383 + 22965599-22966090
          Length = 163

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
 Frame = -2

Query: 613 RTWAKQRNCCFGERDAPRRSCASGTAPSCARARRW*CV---DVAL--RVLEHEIEKFLPA 449
           R W+   +CC  ER +P+    +       R +R  CV   D +L   V+   +   +P+
Sbjct: 24  RPWSTSTSCCNAERRSPQHGLTADEFTPLHRHKRCSCVVPSDHSLVPLVVFIAVRVSMPS 83

Query: 448 SGALAVADHVEVEDAERLQLAHL 380
           S AL +  H  +    R    HL
Sbjct: 84  SSALVIVSHSGLLRLLRASSPHL 106


>07_01_0173 -
           1212858-1213805,1214982-1215642,1215699-1215724,
           1216037-1216121,1216382-1216404,1216463-1216465
          Length = 581

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 332 CRLPRPHRFLHPCL*GYTQHAMGRGEFFPSSD 237
           CR+P  HR L  C+      A+G+GE  PS +
Sbjct: 451 CRIPVMHRHLISCVTARLFVAVGKGEALPSKE 482


>03_06_0614 -
           35099225-35099461,35099545-35099694,35099919-35100066,
           35100152-35100231,35100428-35100594,35100692-35100940,
           35101025-35102310,35102423-35102544,35102946-35103272
          Length = 921

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +1

Query: 445 RMREETFRFHAQGHGERRPRTTIDGPSHKMEQFLKRNYGVERLVRQNNNFA 597
           R  +++    A+G GE   R    G S +     KR++G + L+R++++F+
Sbjct: 361 RKHDDSASLSAEGDGELYCRLPRTGHSGRSSGGSKRSFGAKGLIRRSSSFS 411


>12_02_1035 -
           25570009-25571241,25571940-25573709,25573797-25575118,
           25575208-25575555,25576540-25576633
          Length = 1588

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 511 IDGPSHKMEQFLKRNYGVERLVRQNN 588
           I+G SH ME+  ++N  +E L+ +NN
Sbjct: 526 IEGISHTMEKLSEKNVFLENLLSENN 551


>03_05_0617 + 26163161-26163595,26163678-26164202
          Length = 319

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 592 NCCFGERDAPRRSCASGTAPSCARARRW*CVDVALRVL 479
           +CC+GE D   R+   G A S  R  +  C + A  VL
Sbjct: 247 SCCYGENDVLARAAGDGEAASAERRCKG-CGEAAAVVL 283


>02_01_0500 -
           3623837-3624019,3624591-3624778,3625209-3626147,
           3626311-3626479,3626701-3626871,3626948-3627016,
           3627094-3627201,3627844-3627997,3628659-3628738,
           3628822-3628914,3628951-3629073,3629165-3629915,
           3630123-3630163,3630338-3630385
          Length = 1038

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 496 RPRTTIDGPSHKMEQFLKRNYG 561
           +P + + GPSH  E F + NYG
Sbjct: 381 KPTSGMSGPSHGEENFTRYNYG 402


>01_01_1115 +
           8828544-8828620,8829608-8829779,8829873-8830183,
           8830934-8830983,8832349-8832405,8832742-8832761,
           8834637-8835236,8835283-8836002
          Length = 668

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +2

Query: 239 HYWGKI-RLCPSHVVYILKDKDAKNGEGEAVGM-LKIGRKHLFLFDDKEQVR 388
           H W  +  +CP+H   +LKD D    EG    + + I  K  F+    E +R
Sbjct: 185 HPWNMLCSVCPNHGAALLKDTDVGKDEGIVEELDVVIAVKVKFIMASDESIR 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,632,909
Number of Sequences: 37544
Number of extensions: 336837
Number of successful extensions: 911
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)