Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1482
         (614 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15220| Best HMM Match : VAR1 (HMM E-Value=3)                        29   3.0  
SB_44755| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_24439| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_15220| Best HMM Match : VAR1 (HMM E-Value=3)
          Length = 310

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
 Frame = +3

Query: 75  NEMLR-DEITRIDYNLMTDTFEGNIRTVRMLQDSLSKLIDVLGEYSSAAQGL-NRVITTG 248
           NE LR D  TR++       +E NI  +R+  D+ +++ +   E ++ A  + N    + 
Sbjct: 224 NEALRVDNKTRVN----NQNYEKNIEALRV--DNTTRVSNQNYEKNNEALCVDNTTRVSN 277

Query: 249 EKFASAHRMLCISLKTRMQKTVRARQS 329
           + +   +  LC+  KTR+   V+ +QS
Sbjct: 278 QNYEKNNEALCVDNKTRVSNQVKTKQS 304


>SB_44755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 285 SLKTRMQKTVRARQSAC*RLVASTCFCSTTRNKC 386
           S+ TR+Q+T+RA +    +   S+  CS  + KC
Sbjct: 220 SVSTRIQRTLRALRPKAAKYAGSSNMCSQVKLKC 253


>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2509

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 221 RPQPCDHYWGKIRLCPSHVVYILKD-KDAKNGEGEAVGM 334
           R +  DH W +IR    H+   L+D K    GEG+ + M
Sbjct: 397 RVRAIDHRWNRIRAHLGHLANQLRDYKSVTTGEGKRMKM 435


>SB_24439| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -2

Query: 316 LTVFCILVF-KDIHNMRWAEANFSPVVITRLRPCAADEYSPRTSISFDRLSCSILTVLMF 140
           LT  C+  F  D+ N  W   +   +V  RL       YSP+T   FD +S ++L   +F
Sbjct: 125 LTTECVSYFVPDVDNF-WHAQSMVMLVEKRLPLHIVLFYSPKTRSRFDEISFNVLIHFLF 183


>SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1787

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 493  RRPRTTIDGPSHKMEQFLKR 552
            R+  +T  GP H MEQFL R
Sbjct: 1627 RQVTSTAPGPKHSMEQFLSR 1646


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,172,108
Number of Sequences: 59808
Number of extensions: 381654
Number of successful extensions: 861
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)