Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1482
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045644-7|AAC02603.1|  262|Caenorhabditis elegans Mechanosensor...    60   9e-10
U39854-3|AAA81078.2|  263|Caenorhabditis elegans Hypothetical pr...    52   2e-07
Z79605-8|CAE18060.2|  340|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AL034489-11|CAL49453.1|  340|Caenorhabditis elegans Hypothetical...    28   4.6  
U53339-5|AAA96201.1|  342|Caenorhabditis elegans Serpentine rece...    28   6.1  
U32305-20|AAK18863.1|  796|Caenorhabditis elegans Worm armadillo...    28   6.1  
AF013951-1|AAC47748.1|  796|Caenorhabditis elegans wrm-1 protein.      28   6.1  

>AF045644-7|AAC02603.1|  262|Caenorhabditis elegans Mechanosensory
           abnormality protein17 protein.
          Length = 262

 Score = 60.5 bits (140), Expect = 9e-10
 Identities = 29/82 (35%), Positives = 45/82 (54%)
 Frame = +2

Query: 278 VYILKDKDAKNGEGEAVGMLKIGRKHLFLFDDKEQVRELEPLCVLDFYVVCNRQRTGCGK 457
           +Y+    D +      +G  K+GRK LFL+D + Q  E E LC+LDFYV  + QR G G+
Sbjct: 65  LYLSWKYDEEEKVSRLMGFAKVGRKKLFLYDSQMQTYEGEILCLLDFYVHFSCQRQGVGQ 124

Query: 458 KLFDFMLKDTESDVHALPSTGP 523
           ++ D+M     ++ + L    P
Sbjct: 125 QILDYMFSQEHTEPYQLALDNP 146



 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 511 IDGPSHKMEQFLKRNYGVERLVRQNNNFAV 600
           +D PS  +  F+ + YG+ + V QN NF V
Sbjct: 143 LDNPSVTLLGFMSQKYGLIKPVWQNTNFVV 172


>U39854-3|AAA81078.2|  263|Caenorhabditis elegans Hypothetical
           protein W06B11.1 protein.
          Length = 263

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
 Frame = +2

Query: 281 YILKDKDAKNGEGEAV-GMLKIGRKHLFLFDDKEQVRELEPLCVLDFYVVCNRQRTGCGK 457
           YI+ +K   NG    + G+L++G K L+L D+++     + +C+LDF+VV   QR+G G 
Sbjct: 71  YIMWEK--VNGSKSILKGLLRVGYKTLYLTDNEQNQYMEKAMCILDFFVVPTEQRSGNGF 128

Query: 458 KLFDFMLK 481
           K+FD MLK
Sbjct: 129 KMFDEMLK 136



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 514 DGPSHKMEQFLKRNYGVERLVRQNNNFAVSPKF 612
           D PS  ++QFL++ Y  + LV Q+N +A+   F
Sbjct: 148 DKPSAALQQFLEKYYDRKDLVWQSNKYALCSNF 180


>Z79605-8|CAE18060.2|  340|Caenorhabditis elegans Hypothetical
           protein ZK678.8 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = -3

Query: 594 EIVVLANETLHAVVALQELLHLVRGPV 514
           +IVV  ++T+    AL+++LH+ +GPV
Sbjct: 196 QIVVTNDDTIVNATALEQVLHMKKGPV 222


>AL034489-11|CAL49453.1|  340|Caenorhabditis elegans Hypothetical
           protein ZK678.8 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = -3

Query: 594 EIVVLANETLHAVVALQELLHLVRGPV 514
           +IVV  ++T+    AL+++LH+ +GPV
Sbjct: 196 QIVVTNDDTIVNATALEQVLHMKKGPV 222


>U53339-5|AAA96201.1|  342|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 16 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 8/126 (6%)
 Frame = -2

Query: 391 LAHLFLVVEQKQVLAT--------NLQHADCLALTVFCILVFKDIHNMRWAEANFSPVVI 236
           L  +F+V+E+  +LAT        N      LA   FCI++   +    + +A+++  VI
Sbjct: 117 LTQVFMVIER--LLATIKIESYEHNTSFWHILAYLFFCIVLPLSLLVWAYQDADYNSPVI 174

Query: 235 TRLRPCAADEYSPRTSISFDRLSCSILTVLMFPSKVSVIKL*SMRVISSLNISFTGTIHS 56
           T + P    E   R +I +  + C  L +L     + V++  + R  S + IS +G    
Sbjct: 175 TAISPPKGVEI--RLNILY--IFCFFLAILAL-ILLQVVRFVNKRRESRIEISLSGRFQI 229

Query: 55  IVQIST 38
           +  I T
Sbjct: 230 VENIDT 235


>U32305-20|AAK18863.1|  796|Caenorhabditis elegans Worm armadillo
           protein 1 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 406 AERLQLAHLFLVVEQKQVLATNLQHADCLALTVFC 302
           +ERL +  LF  + Q +V+  +L  +   ALTVFC
Sbjct: 375 SERLGVVSLFHQIMQNEVIHEDLLWSTMQALTVFC 409


>AF013951-1|AAC47748.1|  796|Caenorhabditis elegans wrm-1 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 406 AERLQLAHLFLVVEQKQVLATNLQHADCLALTVFC 302
           +ERL +  LF  + Q +V+  +L  +   ALTVFC
Sbjct: 375 SERLGVVSLFHQIMQNEVIHEDLLWSTMQALTVFC 409


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,974,551
Number of Sequences: 27780
Number of extensions: 282720
Number of successful extensions: 724
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)