Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1482
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.1  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   7.2  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   7.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   7.2  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 196 WENIHQLHKASTV*SLLG 249
           WE +H  H  ST+ S  G
Sbjct: 208 WEIVHMSHSESTIDSKFG 225


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 368 DDKEQVRELEPLCVLDFYVVCNRQRTGCGK 457
           D+K ++   +P    DFY +   + T  GK
Sbjct: 17  DEKNEMYPKDPYLYYDFYPLERGELTNSGK 46


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 368 DDKEQVRELEPLCVLDFYVVCNRQRTGCGK 457
           D+K ++   +P    DFY +   + T  GK
Sbjct: 32  DEKNEMYPKDPYLYYDFYPLERGELTNSGK 61


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 603 RNSEIVVLANETLHAVVALQ 544
           RN E+V    ETL A+  L+
Sbjct: 337 RNIEVVAKNKETLQAITGLK 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,225
Number of Sequences: 438
Number of extensions: 3403
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)