Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1482
         (614 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46170.1 68416.m04996 short-chain dehydrogenase/reductase (SD...    28   4.3  
At5g12370.1 68418.m01455 exocyst complex component Sec10-related...    27   9.9  

>At3g46170.1 68416.m04996 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 288

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 359 FLFDDKEQVRELEPLCVL-DFYVVCNRQRTGCGKKL 463
           F+F +KE +++LEP C L D  V+     +G G+++
Sbjct: 9   FVFGEKEVLKQLEPWCELKDKVVLVTGASSGIGREI 44


>At5g12370.1 68418.m01455 exocyst complex component Sec10-related
           low similarity to SP|O00471 Exocyst complex component
           Sec10 (hSec10) {Homo sapiens}
          Length = 858

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 19/73 (26%), Positives = 30/73 (41%)
 Frame = +3

Query: 15  AKEKLYKFVEICTMEWMVPVNEMLRDEITRIDYNLMTDTFEGNIRTVRMLQDSLSKLIDV 194
           A+   YK ++ C    M  V+ +L  E    DY    D    + R        ++ L  V
Sbjct: 678 AEAAAYKGLQQCIETVMAEVDRLLSSEQKSTDYRSTDDGIASDHRPTNACIRVVAYLSRV 737

Query: 195 LGEYSSAAQGLNR 233
           L    +A +GLN+
Sbjct: 738 LESAFTALEGLNK 750


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,089,832
Number of Sequences: 28952
Number of extensions: 259002
Number of successful extensions: 660
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)