Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1478X
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    30   0.23 
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar...    29   0.41 
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    27   2.2  
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||...    26   2.9  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 29.9 bits (64), Expect = 0.23
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = -2

Query: 451 LRKPLPQKMSL*TPRSTVLGFLVDECLQVLYDRVQARYNNIAEAAVVLLWTYLSDEFV 278
           LR+P+     +  P+  ++       LQV     +A+ N+      V+ WT++SD  +
Sbjct: 62  LRRPISADSVILHPKKKIIALKAQRQLQVFDLEAKAKINSYVMNQDVVYWTWISDSVI 119


>SPBC1604.16c |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 311 YHCGFCNIIIPGLDAIVEHLKTLVHKKAKNSASWRLQRHLLRKR 442
           + C  C I IP    I  H K++ H  +    S + Q HLL+ +
Sbjct: 71  FACEVCQIYIPNSKKI-NHFKSMTHLLSSQHISNKFQPHLLKPK 113


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 281 EFIREVRPEEYHCGFCNIIIPGLDAIVEHL-KTLVHKKAKNSASWRLQRHLLRKRLSEFS 457
           E + E +  E HC +C+I  P       H  K   + + K+ AS  +  HL+R R  + +
Sbjct: 32  ELLVEKQYSEEHCAYCHIKNPNSILKCLHCNKWFCNVRGKSGAS-HIISHLVRARHKQVA 90

Query: 458 LN 463
           L+
Sbjct: 91  LH 92


>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 462

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 161 EMSSLRVRINV*SN*RPQGYCETRSCDEGNPIIVIDSVENEFIREVRPEEYH 316
           +MS   VRI   S     G C  +   +GN  I   S+  + +R ++P EYH
Sbjct: 404 DMSDWYVRITYNSTPVVMGACRGQGY-KGNDTICPLSIFKDTVRALKPVEYH 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,009,945
Number of Sequences: 5004
Number of extensions: 38687
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)