Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1478X
(512 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0541 - 3874476-3874694,3874816-3874868,3875944-3876055,387... 31 0.41
06_01_0531 - 3836420-3836638,3836760-3836812,3837888-3837999,383... 31 0.41
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 29 1.7
04_01_0042 + 473912-474058,474208-474349,474442-476264 28 3.8
09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821 27 6.7
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744... 27 6.7
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540 27 6.7
08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201 27 6.7
11_04_0369 - 16885918-16886080,16886235-16886671,16886767-168870... 27 8.8
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589... 27 8.8
02_05_1225 + 35060642-35060815,35061254-35061802,35062284-350623... 27 8.8
>06_01_0541 -
3874476-3874694,3874816-3874868,3875944-3876055,
3876143-3876321,3876358-3877195
Length = 466
Score = 31.5 bits (68), Expect = 0.41
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 263 IDSVENEFIREVRPEEYHCGFCNIIIPGLDAIVEHLKTLVHKKAKNSASWRLQRHLLRKR 442
+ SV +EF + E CG + + L ++HL T +HKK K+S LQ + R++
Sbjct: 356 LQSVRDEF----KMSENDCGSARVQVAQLTTKIKHLSTTLHKKDKHSRK-GLQEMVQRRK 410
>06_01_0531 -
3836420-3836638,3836760-3836812,3837888-3837999,
3838087-3838265,3838302-3839139
Length = 466
Score = 31.5 bits (68), Expect = 0.41
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 263 IDSVENEFIREVRPEEYHCGFCNIIIPGLDAIVEHLKTLVHKKAKNSASWRLQRHLLRKR 442
+ SV +EF + E CG + + L ++HL T +HKK K+S LQ + R++
Sbjct: 356 LQSVRDEF----KMSENDCGSARVQVAQLTTKIKHLSTTLHKKDKHSRK-GLQEMVQRRK 410
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +1
Query: 325 LQYYYTGLGRDRRALEDTRPQESQEQCFVASTKTSSEEE 441
+ Y G R LED ES E+ +T TSSEEE
Sbjct: 223 IDLYRQGSSGGVRRLEDGFASESSEETVTTTTTTSSEEE 261
>04_01_0042 + 473912-474058,474208-474349,474442-476264
Length = 703
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +1
Query: 283 IHQRGTSRGVPLRLLQYYYTGLGRDRRALED--TRPQESQEQCF 408
IH+ +RG LL+Y+ T G + +L+D TR +E Q++ +
Sbjct: 427 IHEDSQNRGKLADLLRYHSTKSGNELTSLKDYVTRMKEGQKEVY 470
>09_04_0550 - 18481095-18481496,18482623-18483898,18485769-18485821
Length = 576
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 283 IHQRGTSRGVPLRLLQYYYTGLGRDRRALED--TRPQESQEQCFVASTKTSSEEE 441
IH+ T+R LL+Y+ T G + +L+D TR +E Q + + + ++ E
Sbjct: 168 IHEDSTNRTKIAELLRYHSTKSGDELTSLKDYVTRMKEGQSEIYYITGESKKAVE 222
>09_04_0548 -
18469636-18470037,18471164-18472705,18474052-18474474,
18474874-18474999
Length = 830
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 283 IHQRGTSRGVPLRLLQYYYTGLGRDRRALED--TRPQESQEQCFVASTKTSSEEE 441
IH+ T+R LL+Y+ T G + +L+D TR +E Q + + + ++ E
Sbjct: 422 IHEDSTNRTKIAELLRYHSTKSGDELTSLKDYVTRMKEGQSEIYYITGESKKAVE 476
>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
Length = 699
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 283 IHQRGTSRGVPLRLLQYYYTGLGRDRRALED--TRPQESQEQCFVASTKTSSEEE 441
IH+ T+R LL+Y+ T G + +L+D TR +E Q + + + ++ E
Sbjct: 422 IHEDSTNRTKIAELLRYHSTKSGDELTSLKDYVTRMKEGQSEIYYITGESKKAVE 476
>08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201
Length = 699
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 283 IHQRGTSRGVPLRLLQYYYTGLGRDRRALED--TRPQESQEQCFVASTKTSSEEE 441
IH+ T+R LL+Y+ T G + +L+D TR +E Q + + ++ E
Sbjct: 422 IHEDSTNRNKIAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVE 476
>11_04_0369 -
16885918-16886080,16886235-16886671,16886767-16887028,
16887050-16887353,16887771-16888166,16888531-16888579,
16889303-16889737
Length = 681
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -1
Query: 80 CRIMFNHEN-GIDELMQRLPFYYM 12
CRIM N + +L+Q +PFYY+
Sbjct: 231 CRIMVTTRNEAVAKLVQTMPFYYL 254
>03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,
5890540-5890710,5890840-5891007,5891139-5891234,
5891777-5891839,5891949-5892114,5892207-5892274,
5892646-5892789,5893111-5893176,5893329-5893520,
5894567-5894657,5895241-5895329,5895521-5895583,
5895698-5895823,5895902-5895991,5896059-5896181,
5896503-5896619,5896704-5896904,5897643-5897723,
5897897-5897977,5898083-5898184,5898264-5898488,
5898571-5898726,5898798-5899010,5899306-5899455,
5900082-5900204,5900299-5900364,5900555-5900620,
5900686-5900817,5900891-5900965,5901355-5901438,
5901516-5901668,5901741-5901806,5902044-5902205,
5902272-5902388,5902495-5902566,5902702-5902761,
5902869-5902985,5904131-5904430,5904518-5904622,
5905710-5905775,5905853-5906297,5906399-5906567,
5906684-5906736,5906819-5906925
Length = 1981
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 352 VQARYNNIAEAAVVLLWTYLSDEFVFNRVYH 260
V +N EA + L WTYL V N Y+
Sbjct: 1593 VSGTISNKEEAIIYLTWTYLYRRLVVNPAYY 1623
>02_05_1225 +
35060642-35060815,35061254-35061802,35062284-35062348,
35062417-35062957,35063321-35064610
Length = 872
Score = 27.1 bits (57), Expect = 8.8
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = -1
Query: 416 DATKHCSWLSCGRVSSSALRSRPSPV**YCRSRSGTPLDV 297
D KHCS LSC SS L + P CR +G+ LDV
Sbjct: 205 DNDKHCSKLSC-NPPSSPLDAIP-----LCRQTAGSSLDV 238
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,594,165
Number of Sequences: 37544
Number of extensions: 238226
Number of successful extensions: 606
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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