Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1478X
         (512 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5864| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.42 
SB_55877| Best HMM Match : RYDR_ITPR (HMM E-Value=1.8)                 29   2.2  
SB_51849| Best HMM Match : Pedibin (HMM E-Value=3.4)                   29   2.2  
SB_14125| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_4802| Best HMM Match : zf-C2H2 (HMM E-Value=9.1e-19)                27   6.9  
SB_4345| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_44470| Best HMM Match : SNF2_N (HMM E-Value=1.2e-17)                27   9.1  
SB_972| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.1  

>SB_5864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 299 RPEEYHCGFCNIIIPGLDAIVEHLKTLVHKKAKNSA 406
           R + Y+C FCN        +  HLKTL H +  +++
Sbjct: 67  RRKRYYCDFCNTTFGKKWGLTRHLKTLAHAQVTSNS 102


>SB_55877| Best HMM Match : RYDR_ITPR (HMM E-Value=1.8)
          Length = 515

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 447 ESLFLRRCLCRRHEALFLAFLWTSVFKCSTIA 352
           E +  +    RRH A+FL +LW+S  + + +A
Sbjct: 313 ELIICKNEFLRRHRAVFLTYLWSSDIEATLVA 344


>SB_51849| Best HMM Match : Pedibin (HMM E-Value=3.4)
          Length = 229

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 362 EHLKTLVHKKAKNSASWRLQRHLLRKRLSEFSLND*IMEI 481
           EH   +     K S +WR  R LLR+ L E    D I+++
Sbjct: 122 EHPNEVTGSSNKPSMNWRQGRQLLRQYLQEVGYTDAILDV 161


>SB_14125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 447 ESLFLRRCLCRRHEALFLAFLWTSVFKCSTIA 352
           E +  +    RRH A+FL +LW+S  + + +A
Sbjct: 28  ELIICKNEFLRRHRAVFLTYLWSSDIEATLVA 59


>SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 355 DRRALEDTRPQESQEQCFVASTKTSSEEEA 444
           D  AL+D  PQE+Q++    + +TS + EA
Sbjct: 520 DTFALDDEEPQEAQQEKASEAAETSKQSEA 549


>SB_4802| Best HMM Match : zf-C2H2 (HMM E-Value=9.1e-19)
          Length = 374

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/45 (20%), Positives = 21/45 (46%)
 Frame = +2

Query: 266 DSVENEFIREVRPEEYHCGFCNIIIPGLDAIVEHLKTLVHKKAKN 400
           + +    ++    + + CGFC+    G+  +  H++T   +K  N
Sbjct: 304 NELRTHVVQHTNEKPFKCGFCSRTFAGITTLNNHIRTHTGEKPFN 348


>SB_4345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 280 RIHQRGTSRGVPLRLLQYYYTGLG 351
           RI+++G SR VP++L+   +TG G
Sbjct: 11  RIYEQGPSRDVPMQLIYPNFTGHG 34


>SB_44470| Best HMM Match : SNF2_N (HMM E-Value=1.2e-17)
          Length = 549

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/75 (17%), Positives = 34/75 (45%)
 Frame = -2

Query: 412 PRSTVLGFLVDECLQVLYDRVQARYNNIAEAAVVLLWTYLSDEFVFNRVYHNNGISFIAA 233
           P   ++ F V   ++ L+     RY  +    + ++W+ L+    +  +Y+N     +  
Sbjct: 86  PPIGIMWFSVTSTMEYLHLYNNTRYKALTPHPIGIMWSRLTSTMEYLHLYNNTSYKALTP 145

Query: 232 SCLTVALWASI*SNV 188
             + + +W+S+ S +
Sbjct: 146 PPIGI-MWSSVTSTM 159


>SB_972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 278 NEFIR--EVRPEEYHCGFCNIIIPGLDAIVEHLKTLVHKK 391
           NEF+   E + E  HC +C  +      + +H++   HKK
Sbjct: 201 NEFLDLLEEKLESLHCLYCEKVFKDRQILKDHMRKKQHKK 240


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,977,024
Number of Sequences: 59808
Number of extensions: 301797
Number of successful extensions: 764
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)