Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1478X
(512 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical pr... 30 0.85
Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical p... 30 1.1
Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical pr... 30 1.1
AY241928-1|AAO85277.1| 806|Caenorhabditis elegans xylosyltransf... 29 1.5
AJ496235-1|CAD42732.1| 806|Caenorhabditis elegans peptide O-xyl... 29 1.5
AC025722-4|AAK68509.3| 806|Caenorhabditis elegans Squashed vulv... 29 1.5
Z82268-2|CAD89737.1| 389|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z82268-1|CAB05197.3| 508|Caenorhabditis elegans Hypothetical pr... 29 2.6
L25598-6|AAA27939.2| 886|Caenorhabditis elegans Hypothetical pr... 27 6.0
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 27 6.0
AC084158-14|AAK68557.2| 207|Caenorhabditis elegans Hypothetical... 27 7.9
AC084158-13|AAK68570.1| 337|Caenorhabditis elegans Hypothetical... 27 7.9
AC024202-5|AAP86609.1| 827|Caenorhabditis elegans C. elegans AP... 27 7.9
AC024202-3|AAF36038.2| 955|Caenorhabditis elegans C. elegans AP... 27 7.9
>Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical
protein F17C11.10 protein.
Length = 1101
Score = 30.3 bits (65), Expect = 0.85
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +3
Query: 177 EFELTFDQIDAHKATVRHEAAMKEIPXXXXXXXKTNSSERYVQRSTTAASAILLYRAW 350
EF++ F Q ++H+ + HE +KE+ + S +V+ + T I+ AW
Sbjct: 760 EFKVPFCQPESHRTEMEHEMFLKELSLADAILERNGDS--HVEEAKTLTKTIVKLFAW 815
>Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 350 DAIVEHLKTLVHKKAKNSASWRLQRHLLRKRLS 448
D EHLK L + KN A+W++++ L K ++
Sbjct: 848 DDAEEHLKKLSDDQKKNDAAWKIEKSKLEKDIA 880
>Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 350 DAIVEHLKTLVHKKAKNSASWRLQRHLLRKRLS 448
D EHLK L + KN A+W++++ L K ++
Sbjct: 848 DDAEEHLKKLSDDQKKNDAAWKIEKSKLEKDIA 880
>Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical
protein C34E11.3 protein.
Length = 1577
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 350 DAIVEHLKTLVHKKAKNSASWRLQRHLLRKRLS 448
D EHLK L + KN A+W++++ L K ++
Sbjct: 848 DDAEEHLKKLSDDQKKNDAAWKIEKSKLEKDIA 880
>AY241928-1|AAO85277.1| 806|Caenorhabditis elegans
xylosyltransferase protein.
Length = 806
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Frame = +2
Query: 254 IIVIDSVENEFIREVRPEE-------YHCGFCNIIIPGLDAIVEHLKTLVHKKAKNSASW 412
++ IDS+E ++ + PE+ YH F NI G+D H ++L + K++ +
Sbjct: 510 MVDIDSIEAAEMQSISPEKLQLNHPTYHFAFANIFKTGIDEQKLHFESLANFALKSTETR 569
Query: 413 RLQRHLLR 436
R +LR
Sbjct: 570 AKFRKVLR 577
>AJ496235-1|CAD42732.1| 806|Caenorhabditis elegans peptide
O-xylosyltransferase protein.
Length = 806
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Frame = +2
Query: 254 IIVIDSVENEFIREVRPEE-------YHCGFCNIIIPGLDAIVEHLKTLVHKKAKNSASW 412
++ IDS+E ++ + PE+ YH F NI G+D H ++L + K++ +
Sbjct: 510 MVDIDSIEAAEMQSISPEKLQLNHPTYHFAFANIFKTGIDEQKLHFESLANFALKSTETR 569
Query: 413 RLQRHLLR 436
R +LR
Sbjct: 570 AKFRKVLR 577
>AC025722-4|AAK68509.3| 806|Caenorhabditis elegans Squashed vulva
protein 6 protein.
Length = 806
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Frame = +2
Query: 254 IIVIDSVENEFIREVRPEE-------YHCGFCNIIIPGLDAIVEHLKTLVHKKAKNSASW 412
++ IDS+E ++ + PE+ YH F NI G+D H ++L + K++ +
Sbjct: 510 MVDIDSIEAAEMQSISPEKLQLNHPTYHFAFANIFKTGIDEQKLHFESLANFALKSTETR 569
Query: 413 RLQRHLLR 436
R +LR
Sbjct: 570 AKFRKVLR 577
>Z82268-2|CAD89737.1| 389|Caenorhabditis elegans Hypothetical
protein F52B11.1b protein.
Length = 389
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 250 SHYCDRLC*KRIHQRGTSRGVPLRLLQYYYTGLGRDRRALED 375
S YC C K + + + +P R QY++ G R+LED
Sbjct: 55 SKYCSDECGKELARMRLTEILPNRCKQYFFEGPSGGPRSLED 96
>Z82268-1|CAB05197.3| 508|Caenorhabditis elegans Hypothetical
protein F52B11.1a protein.
Length = 508
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 250 SHYCDRLC*KRIHQRGTSRGVPLRLLQYYYTGLGRDRRALED 375
S YC C K + + + +P R QY++ G R+LED
Sbjct: 174 SKYCSDECGKELARMRLTEILPNRCKQYFFEGPSGGPRSLED 215
>L25598-6|AAA27939.2| 886|Caenorhabditis elegans Hypothetical
protein C06G4.1 protein.
Length = 886
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 116 NNSPVNDDVFVSCRIMFNHENGIDELMQRLPF 21
NN +N+D F I +NH N L R+ F
Sbjct: 283 NNQEINNDNFYQNSICYNHNNYPSNLESRVSF 314
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 343 GLGRDRRALEDTRPQESQEQCFVASTKTSSEEE 441
G + ALE R +E++ + VASTK+S+ E
Sbjct: 998 GENEAKAALEKRRQEEAERRARVASTKSSASSE 1030
>AC084158-14|AAK68557.2| 207|Caenorhabditis elegans Hypothetical
protein Y69A2AR.13 protein.
Length = 207
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 465 SFRLNSESLFLRRCLCRRHEALFLAFLWTSVFKCSTIAS 349
S RL ++ R LC+ H A ++W V K I +
Sbjct: 114 SMRLGFLPIYPNRALCKLHHAEIKKWIWACVVKSGDIGA 152
>AC084158-13|AAK68570.1| 337|Caenorhabditis elegans Hypothetical
protein Y69A2AR.25 protein.
Length = 337
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 465 SFRLNSESLFLRRCLCRRHEALFLAFLWTSVFKCSTIAS 349
S RL ++ R LC+ H A ++W V K I +
Sbjct: 184 SMRLGFLPIYPNRALCKLHHAEIKKWIWACVVKSGDIGA 222
>AC024202-5|AAP86609.1| 827|Caenorhabditis elegans C. elegans APB-1
protein, isoform c protein.
Length = 827
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -2
Query: 382 DECLQVLYDRVQARYNNIAEAAVVLLWTYLSDEFVFNRVYHNNGISFIAASC 227
+ C+Q L + +Q + N + + AVV+ + D F R Y N S I+A C
Sbjct: 386 ERCVQTLLELIQTKVNYVVQEAVVV----IKDIF---RKYPNRYESIISALC 430
>AC024202-3|AAF36038.2| 955|Caenorhabditis elegans C. elegans APB-1
protein, isoform a protein.
Length = 955
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -2
Query: 382 DECLQVLYDRVQARYNNIAEAAVVLLWTYLSDEFVFNRVYHNNGISFIAASC 227
+ C+Q L + +Q + N + + AVV+ + D F R Y N S I+A C
Sbjct: 386 ERCVQTLLELIQTKVNYVVQEAVVV----IKDIF---RKYPNRYESIISALC 430
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,137,391
Number of Sequences: 27780
Number of extensions: 221250
Number of successful extensions: 621
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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