Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1478X
         (512 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    24   0.80 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.80 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.4  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   3.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   3.2  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   3.2  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   7.5  

>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 0.80
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -1

Query: 122 IHNNSPVNDDVFVSCRIMFNHENGIDELMQRLPFYY 15
           IHNN+    +   +C+ ++ + N I+++   +P YY
Sbjct: 90  IHNNNNYKYNYNNNCKKLYYNINYIEQIPIPVPVYY 125


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 0.80
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 340  TGLGRDRRALEDTRPQESQ 396
            TG+ RD+RA+ + R Q+ Q
Sbjct: 1294 TGIPRDQRAMTEARNQQQQ 1312


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -1

Query: 176 ASLTFQSVRVRYQIKAEYIHNNSPVNDDVFVSCRIMFNHENGIDELMQRLPF 21
           A+L+F  +    Q+    IHNN PV+       R+   H+N + +  + +PF
Sbjct: 568 ATLSFCEMIHNAQVNKRSIHNNYPVH----TFGRLTSKHDNSLYD--EYIPF 613


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 248 NPIIVIDSVENEFIREVRPE 307
           NP++ I S+EN  +  + PE
Sbjct: 180 NPVLFISSLENISLNGIDPE 199


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 248 NPIIVIDSVENEFIREVRPE 307
           NP++ I S+EN  +  + PE
Sbjct: 218 NPVLFISSLENISLNGIDPE 237


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +2

Query: 305 EEYHCGFCNIIIPGLDAIVEHLKTLVHKKAK 397
           +E+ C  CN I+  L  +  H++ +  + +K
Sbjct: 1   DEFRCEPCNKILTSLTRLRRHIQNVHTRPSK 31


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
 Frame = +2

Query: 305 EEYHCGFCNIIIPGLDAIVEHLKT-----LVHKKAKN-SASWRLQRHL 430
           + + C +C  +   L A+  H++T       H   K  S  W LQ H+
Sbjct: 15  KSFSCKYCEKVYVSLGALKMHIRTHTLPCKCHLCGKAFSRPWLLQGHI 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,135
Number of Sequences: 438
Number of extensions: 2448
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)