Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1478X
         (512 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80620.1 68414.m09461 ribosomal protein S15 family protein si...    32   0.20 
At1g15810.1 68414.m01897 ribosomal protein S15 family protein co...    31   0.34 
At2g17650.1 68415.m02042 AMP-dependent synthetase and ligase fam...    27   5.6  
At1g58120.1 68414.m06589 expressed protein                             27   5.6  
At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / hea...    27   7.4  
At5g54840.2 68418.m06831 GTP-binding family protein similar to S...    27   9.8  
At5g54840.1 68418.m06830 GTP-binding family protein similar to S...    27   9.8  
At1g19140.2 68414.m02381 expressed protein                             27   9.8  
At1g19140.1 68414.m02380 expressed protein                             27   9.8  

>At1g80620.1 68414.m09461 ribosomal protein S15 family protein
           similar to ribosomal protein S15 GB:AAD36415 from
           [Thermotoga maritima]
          Length = 414

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 293 EVRPEEYHCGFCNIIIPGLDAIVEHLKTLVHKKAKNSASWRLQRHLLRKRLSEF 454
           E +  E  CG   + +  L   ++HL +++HKK K+S    +     RK+L ++
Sbjct: 335 EFKMSESDCGSARVQVAQLTTKIKHLSSVLHKKDKHSRKGLIAMVQRRKKLLKY 388


>At1g15810.1 68414.m01897 ribosomal protein S15 family protein
           contains similarity to ribosomal protein S15
          Length = 419

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 293 EVRPEEYHCGFCNIIIPGLDAIVEHLKTLVHKKAKNSASWRLQRHLLRKRLSEF 454
           E +  E  CG   + +  L   ++HL + +HKK K+S    L     RK+L ++
Sbjct: 340 EFKMSESDCGSARVQVAQLTTKIKHLSSSLHKKDKHSRKGLLGMVQKRKKLLKY 393


>At2g17650.1 68415.m02042 AMP-dependent synthetase and ligase family
           protein similar to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501; identical to cDNA adenosine monophosphate
           binding protein 2 AMPBP2 (AMPBP2) GI:20799712
          Length = 603

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +2

Query: 296 VRPEEYHCGFCNIIIPGLDAIVEHLKTLVHKKAKNSASWRLQRHLLRKRLSE 451
           ++PEE   GFC   +P   A     KT+V      +++ ++Q++LLRK+  E
Sbjct: 553 IKPEEI-IGFCRDHLPHYMAP----KTIVFGDIPKTSTGKVQKYLLRKKADE 599


>At1g58120.1 68414.m06589 expressed protein
          Length = 420

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 444 SLFLRRCLCRRHEALFLAFLWTSVFKCSTIASKP 343
           SLF+R  L      LFL+F W S+ K  T A+ P
Sbjct: 47  SLFMRSTLLA---LLFLSFTWLSLLKYGTTATAP 77


>At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / heat
           shock protein 83 (HSP83) nearly identical to SP|P27323
           Heat shock protein 81-1 (HSP81-1) (Heat shock protein
           83) {Arabidopsis thaliana}; contains Pfam profiles
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein, PF00183: Hsp90 protein
          Length = 705

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +1

Query: 283 IHQRGTSRGVPLRLLQYYYTGLGRDRRALED--TRPQESQEQCFVASTKTSSEEE 441
           IH+   +RG    LL+Y+ T  G +  + +D  TR +E Q+  F  + ++    E
Sbjct: 426 IHEDSQNRGKIADLLRYHSTKSGDEMTSFKDYVTRMKEGQKDIFYITGESKKAVE 480


>At5g54840.2 68418.m06831 GTP-binding family protein similar to
           SP|P87027 Septum-promoting GTP-binding protein 1 (GTPase
           spg1)(Sid3 protein) {Schizosaccharomyces pombe}
          Length = 215

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 399 FLAFLWTSVFKCSTIASKP 343
           F  FLW  +  CS+I  KP
Sbjct: 38  FFRFLWRKIVSCSSIIEKP 56


>At5g54840.1 68418.m06830 GTP-binding family protein similar to
           SP|P87027 Septum-promoting GTP-binding protein 1 (GTPase
           spg1)(Sid3 protein) {Schizosaccharomyces pombe}
          Length = 288

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 399 FLAFLWTSVFKCSTIASKP 343
           F  FLW  +  CS+I  KP
Sbjct: 38  FFRFLWRKIVSCSSIIEKP 56


>At1g19140.2 68414.m02381 expressed protein
          Length = 312

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 406 STVLGFLVDECLQVLYDRVQA 344
           + ++ F +DECLQ+L DR+ +
Sbjct: 135 AALVEFFMDECLQLLMDRIDS 155


>At1g19140.1 68414.m02380 expressed protein
          Length = 311

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 406 STVLGFLVDECLQVLYDRVQA 344
           + ++ F +DECLQ+L DR+ +
Sbjct: 135 AALVEFFMDECLQLLMDRIDS 155


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,389,698
Number of Sequences: 28952
Number of extensions: 202114
Number of successful extensions: 570
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)