Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1477
         (809 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    25   0.71 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   2.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   2.2  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   2.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.9  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    23   3.8  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   5.0  

>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
 Frame = -3

Query: 468 SYSGSPVHHSICPVLL----PKCN 409
           S+ G P+HH I P +L    P CN
Sbjct: 91  SHHGPPIHHQIRPPILHDTQPMCN 114


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 468 SYSGSPVHHSICPVLL 421
           S+ G P+HH I P +L
Sbjct: 91  SHHGPPIHHQIRPPIL 106


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 468 SYSGSPVHHSICPVLL 421
           S+ G P+HH I P +L
Sbjct: 91  SHHGPPIHHQIRPPIL 106


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 468 SYSGSPVHHSICPVLL 421
           S+ G P+HH I P +L
Sbjct: 91  SHHGPPIHHQIRPPIL 106


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +3

Query: 204 FRQRFPSYPCHNRLQSWSRYEPQAELGLSHVLRSAAGLTTKNISSFL 344
           +R+RF     +  L  W   + QAE  LS  +   A L T+N SS L
Sbjct: 239 YRKRFRMEKIYVALV-WG-VKDQAEFTLSGQVMKYAALATENFSSLL 283


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 341 PYSTQTLSDWSIC*CFWRQRIHLLHFGSNTG 433
           P     LS+++ C C W Q + LL  G+  G
Sbjct: 565 PTGGDALSEFNFCGCGWPQHM-LLPKGTEAG 594



 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 63  KFLETLGSNATKAYDLRSLLF 1
           +FLE  G  A  A DLR  LF
Sbjct: 379 RFLEPFGVMADPAVDLRDPLF 399


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 232 VTIAFKAGLVMNHKLNWDCRMYY 300
           VT   + G +  H    DCRMYY
Sbjct: 913 VTCDEEEGHISYHPDKADCRMYY 935


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,497
Number of Sequences: 336
Number of extensions: 3949
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22102797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)