Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1477
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    36   0.007
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    30   0.45 
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    29   0.59 
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    29   1.0  
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po...    29   1.0  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    27   2.4  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    27   4.2  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    26   5.5  
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    26   7.3  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    26   7.3  
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    25   9.6  
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    25   9.6  

>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 21/75 (28%), Positives = 38/75 (50%)
 Frame = +3

Query: 255 SRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 434
           SR E     G +H L   A   TKN S   ++ +    GA+++A   RE   Y   A ++
Sbjct: 54  SRAETAKNNGAAHFLEHLAFKGTKNRSQKALELEFENTGAHLNAYTSREQTVYYAHAFKN 113

Query: 435 KLNDALEILNNLVSN 479
            + +A+ +L ++++N
Sbjct: 114 AVPNAVAVLADILTN 128


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 19/77 (24%), Positives = 33/77 (42%)
 Frame = +3

Query: 243 LQSWSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLE 422
           +++ SRYE +   G+SH +   A   T+      ++ KL  +G     S  RE + Y   
Sbjct: 73  VKAGSRYETKKFSGVSHFMDRLAFQATERTPVGEMKAKLENLGGNYMCSTSRESMIYQAA 132

Query: 423 ATQDKLNDALEILNNLV 473
              D +    ++L   V
Sbjct: 133 VFNDDVKSMSKLLAETV 149


>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = +2

Query: 560 AVDLLHKAAYRRGLGNSLFISPKRINDISSESLQLFASQNITPSRCAVTVIGDSQERAA 736
           A+  LH+ A+ RG+GN +++       IS   ++ FAS+    S  +V   G   ++A+
Sbjct: 156 AMAKLHEKAFHRGIGNEVYLPASASPSIS--EIKDFASKAYVKSNFSVISSGPDVQKAS 212


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +3

Query: 225 YPCHNRLQSWSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVS 383
           Y   N  + W  Y PQA +GL   L  A      + SS+     +   G Y S
Sbjct: 202 YADENLRKKWKEYTPQARIGLPDELPGAYLYLASDASSYCTGSDIIVDGGYCS 254


>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +3

Query: 228 PCHNRLQSWSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAY 377
           P +  L+ W  Y P   LGL+  LR        N SSF+    L   G Y
Sbjct: 209 PGYEFLKQWEPYVPFKRLGLTPELRGTYLYLASNASSFVTGLDLIVDGGY 258


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 393 DREFIYYTLEATQDKLNDALEILNNLVSNQEFRP 494
           +RE  YY L+   +KL++ +  LN  + ++   P
Sbjct: 429 ERELKYYELKRKDEKLDEGIRALNQALHHESIMP 462


>SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1163

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 578  KAAYRRGLGNSLFISPKRINDISSESLQ 661
            K ++RRGL N +  S KR+ D   E ++
Sbjct: 1110 KESFRRGLNNRVKFSNKRVRDDYDEEME 1137


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 279 LGLSHVLRSAAG-LTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 434
           L  S  L S +G  T+ N+S+   QR  ++   + S + D   +YY    T D
Sbjct: 79  LSTSSPLISTSGQFTSNNVSTTSSQRHNTKTITFFSGTSDYTSVYYDTTGTDD 131


>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 29  FVALLPKVSKNLRKWHPKLSSPPLFVMLRSGATPKL 136
           FVA L  V + L +WH KL     F  ++    PK+
Sbjct: 70  FVADLNGVYRQLLRWHAKLPRVQPFYAVKCNPDPKV 105


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +3

Query: 243 LQSWSRYEPQAELGLSHVLRS-AAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTL 419
           +Q+ +  E + +L   H+L +  AGL T++  SF+ + ++SQ+ +    S D  +  Y++
Sbjct: 291 IQNQNLDEKRQKLERDHMLMAQCAGLMTRSDKSFIARIQISQLMSEDPESDDFYYRVYSI 350


>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 515 PRLKYDIISLPPQIRAVDLLHKAAYRRGLGNSL-FISPKRINDISSESL 658
           PR KYD++SL     A  L   + +   L   L ++S      I+SESL
Sbjct: 226 PRFKYDLLSLGRGFNATGLFRWSRHPNFLAEQLIWLSFYLFGAIASESL 274


>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 741 LFKPKIDPSDASQAEAS 791
           LFK KIDPS+  QAE +
Sbjct: 151 LFKGKIDPSNIHQAECT 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,322,621
Number of Sequences: 5004
Number of extensions: 68912
Number of successful extensions: 180
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)