Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1477
(809 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0648 - 30844289-30844341,30844536-30844648,30845435-308454... 58 1e-08
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 54 1e-07
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 54 1e-07
12_02_0312 + 17395716-17398112 31 1.4
02_04_0060 - 19345316-19345453,19345718-19345849,19345937-193460... 31 1.4
01_05_0515 - 22884642-22885160 29 4.4
11_06_0545 + 24839536-24843421,24843871-24844310 29 5.8
01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011... 29 5.8
07_03_0327 + 16817149-16817438,16818029-16818224,16818309-168196... 28 7.6
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155... 28 7.6
>01_06_0648 -
30844289-30844341,30844536-30844648,30845435-30845484,
30845572-30845642,30845725-30845797,30846744-30846841,
30846936-30847002,30847150-30847230,30847312-30847479,
30847563-30847730,30847813-30848109,30848205-30848426,
30849287-30849325
Length = 499
Score = 57.6 bits (133), Expect = 1e-08
Identities = 33/87 (37%), Positives = 47/87 (54%)
Frame = +3
Query: 255 SRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 434
S YE A G SH+L A +T N S + R++ IG VSAS RE + YT +A +
Sbjct: 101 SIYETPASSGASHLLERMAFKSTTNRSHLRLVREVEAIGGNVSASASREQMCYTYDAFKA 160
Query: 435 KLNDALEILNNLVSNQEFRPWELNEML 515
+ + +E+L + V N F WE+ E L
Sbjct: 161 YVPEMVEVLIDSVRNPAFFNWEIKEQL 187
>05_06_0132 +
25893241-25893435,25894266-25894487,25894567-25894863,
25894944-25895111,25895201-25895368,25895456-25895536,
25895704-25895770,25895874-25895971,25896587-25896659,
25896753-25896823,25896919-25896968,25897698-25897810,
25898182-25898300,25898629-25898721,25899025-25899051,
25899422-25899823,25900467-25900513,25900612-25900651,
25900733-25900795,25900881-25901018,25901873-25902031,
25902111-25902164,25902324-25902392,25902514-25902643,
25902909-25902949,25903133-25903178,25903200-25903357,
25903560-25903605,25903702-25903853,25904022-25904243
Length = 1202
Score = 54.0 bits (124), Expect = 1e-07
Identities = 31/87 (35%), Positives = 45/87 (51%)
Frame = +3
Query: 255 SRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 434
S YE + G SH+L A +T N S + R++ IG V AS RE + YT +A +
Sbjct: 153 SVYETSSSSGTSHLLERMAFKSTTNRSHLRLVREVEAIGGNVFASASREQMSYTYDALKC 212
Query: 435 KLNDALEILNNLVSNQEFRPWELNEML 515
+ +E+L + V N F WE+ E L
Sbjct: 213 YAPEMVEVLIDSVRNPAFLEWEVKEQL 239
Score = 33.1 bits (72), Expect = 0.27
Identities = 17/71 (23%), Positives = 29/71 (40%)
Frame = +2
Query: 536 ISLPPQIRAVDLLHKAAYRRGLGNSLFISPKRINDISSESLQLFASQNITPSRCAVTVIG 715
+S P ++ LH A Y L L S +N + +L+ F S+N T R + G
Sbjct: 249 VSGDPHGLLMEALHSAGYSGALAKPLMASESAVNRLDVATLEEFVSENYTAPRMVLAASG 308
Query: 716 DSQERAALIVQ 748
+ + +
Sbjct: 309 IEHDELVSVAE 319
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/88 (30%), Positives = 47/88 (53%)
Frame = +3
Query: 255 SRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 434
S +E LG + +L+ A TT N S + R++ +G V AS +RE + Y+ A +
Sbjct: 108 SVHEAPETLGATQLLKKMAYTTTTNRSHLRVVREIEAVGGNVKASANREMMSYSYAALKT 167
Query: 435 KLNDALEILNNLVSNQEFRPWELNEMLL 518
+ + +E+L + V N F WE+ E ++
Sbjct: 168 YMPEMVEVLIDCVRNPAFLDWEVKEQIM 195
>12_02_0312 + 17395716-17398112
Length = 798
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/63 (25%), Positives = 36/63 (57%)
Frame = +3
Query: 294 VLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLV 473
+++S +G + K ++ +Q+KL ++ SGD+ ++ + + D +ND E++N L
Sbjct: 238 IIQSDSGESNKQLTLEALQKKLHEL------SGDKRYLLVLDDISHDNINDWEELMNLLP 291
Query: 474 SNQ 482
S +
Sbjct: 292 SGR 294
>02_04_0060 -
19345316-19345453,19345718-19345849,19345937-19346005,
19346453-19346551,19346702-19346786,19346890-19346990,
19347294-19347362,19347635-19347675,19348343-19348458,
19348546-19348702,19349266-19349474,19349811-19349914,
19350234-19350381,19350463-19350761,19350844-19351377
Length = 766
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +3
Query: 453 EILNNLVSNQEFRPWELNEMLLV*NMILFLYHPKFVL*ICSIRQPIVVDWVTRSSSRQRG 632
++ ++ Q+F P L E L ++ L HP VL + ++ QP + VT SR
Sbjct: 537 DVAVKILMEQDFHPERLKEFLREVAIMKSLRHPNIVLFMGAVTQPPKLSIVTEYLSRGSL 596
Query: 633 LMIFHQ 650
I H+
Sbjct: 597 YRILHK 602
>01_05_0515 - 22884642-22885160
Length = 172
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 121 GYAQAAPAVKKDVRIQSSV-LPNKTFVAALDNGSPVTRVTIAFKAGLVMNHKL 276
G A+ A +D R+++ + + + A D GS + AF G+V++H++
Sbjct: 112 GAAEVVMATMEDARVEAEMQMEMEKERARWDRGSAIAAAVAAFALGVVVSHRI 164
>11_06_0545 + 24839536-24843421,24843871-24844310
Length = 1441
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 390 GDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWE 500
GD +FI +E+ Q L DA + NN S+Q+ W+
Sbjct: 29 GDVQFIKDEMESMQGFLLDAADAANNNSSSQQVLAWQ 65
>01_06_0430 +
29299970-29300031,29300162-29300294,29301057-29301160,
29302201-29302372,29302488-29302628,29302707-29303055,
29303133-29305477
Length = 1101
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/76 (23%), Positives = 35/76 (46%)
Frame = +1
Query: 82 TLVAPFIRHVTIRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGLV 261
T +A +H T + Y + A +VR S V ++ + L G+P T+ I +
Sbjct: 124 TELADVRKHFTSK-YGKEFAAAALEVRPDSGV--SRLVIEKLSAGAPDTQTKIKTLTSIA 180
Query: 262 MNHKLNWDCRMYYDQL 309
H + W+ + + ++L
Sbjct: 181 EEHNIKWEPKAFEEKL 196
>07_03_0327 +
16817149-16817438,16818029-16818224,16818309-16819642,
16819925-16820097,16820257-16820503,16820599-16820893,
16820934-16820982,16821357-16821562
Length = 929
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/61 (22%), Positives = 29/61 (47%)
Frame = +3
Query: 276 ELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALE 455
E+ + +LRS + +K I + + + I D +F+Y +LE + L D ++
Sbjct: 515 EVAVKRLLRSHNDIASKEIENLIASDQDPNIVRMYGFEQDNDFVYISLERCRCSLADLIQ 574
Query: 456 I 458
+
Sbjct: 575 L 575
>05_04_0226 +
19215091-19215172,19215281-19215394,19215508-19215590,
19215682-19215820,19215862-19216191,19216414-19216693,
19216795-19216956,19217134-19217349,19217458-19217495,
19217597-19217760,19217833-19217946,19218042-19218083,
19218180-19218983
Length = 855
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 73 ASKTLVAPFIRHVTIRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDN 213
A + + P IRH+ ++ +++ AV R Q S+ P+K V+ L +
Sbjct: 673 ARRVSLTPVIRHIPLQPKRRSSLAVLPTQREQLSIFPDKRSVSRLSH 719
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,269,947
Number of Sequences: 37544
Number of extensions: 432792
Number of successful extensions: 906
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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