BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1477 (809 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_06_0648 - 30844289-30844341,30844536-30844648,30845435-308454... 58 1e-08 05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 54 1e-07 01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 54 1e-07 12_02_0312 + 17395716-17398112 31 1.4 02_04_0060 - 19345316-19345453,19345718-19345849,19345937-193460... 31 1.4 01_05_0515 - 22884642-22885160 29 4.4 11_06_0545 + 24839536-24843421,24843871-24844310 29 5.8 01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011... 29 5.8 07_03_0327 + 16817149-16817438,16818029-16818224,16818309-168196... 28 7.6 05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155... 28 7.6 >01_06_0648 - 30844289-30844341,30844536-30844648,30845435-30845484, 30845572-30845642,30845725-30845797,30846744-30846841, 30846936-30847002,30847150-30847230,30847312-30847479, 30847563-30847730,30847813-30848109,30848205-30848426, 30849287-30849325 Length = 499 Score = 57.6 bits (133), Expect = 1e-08 Identities = 33/87 (37%), Positives = 47/87 (54%) Frame = +3 Query: 255 SRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 434 S YE A G SH+L A +T N S + R++ IG VSAS RE + YT +A + Sbjct: 101 SIYETPASSGASHLLERMAFKSTTNRSHLRLVREVEAIGGNVSASASREQMCYTYDAFKA 160 Query: 435 KLNDALEILNNLVSNQEFRPWELNEML 515 + + +E+L + V N F WE+ E L Sbjct: 161 YVPEMVEVLIDSVRNPAFFNWEIKEQL 187 >05_06_0132 + 25893241-25893435,25894266-25894487,25894567-25894863, 25894944-25895111,25895201-25895368,25895456-25895536, 25895704-25895770,25895874-25895971,25896587-25896659, 25896753-25896823,25896919-25896968,25897698-25897810, 25898182-25898300,25898629-25898721,25899025-25899051, 25899422-25899823,25900467-25900513,25900612-25900651, 25900733-25900795,25900881-25901018,25901873-25902031, 25902111-25902164,25902324-25902392,25902514-25902643, 25902909-25902949,25903133-25903178,25903200-25903357, 25903560-25903605,25903702-25903853,25904022-25904243 Length = 1202 Score = 54.0 bits (124), Expect = 1e-07 Identities = 31/87 (35%), Positives = 45/87 (51%) Frame = +3 Query: 255 SRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 434 S YE + G SH+L A +T N S + R++ IG V AS RE + YT +A + Sbjct: 153 SVYETSSSSGTSHLLERMAFKSTTNRSHLRLVREVEAIGGNVFASASREQMSYTYDALKC 212 Query: 435 KLNDALEILNNLVSNQEFRPWELNEML 515 + +E+L + V N F WE+ E L Sbjct: 213 YAPEMVEVLIDSVRNPAFLEWEVKEQL 239 Score = 33.1 bits (72), Expect = 0.27 Identities = 17/71 (23%), Positives = 29/71 (40%) Frame = +2 Query: 536 ISLPPQIRAVDLLHKAAYRRGLGNSLFISPKRINDISSESLQLFASQNITPSRCAVTVIG 715 +S P ++ LH A Y L L S +N + +L+ F S+N T R + G Sbjct: 249 VSGDPHGLLMEALHSAGYSGALAKPLMASESAVNRLDVATLEEFVSENYTAPRMVLAASG 308 Query: 716 DSQERAALIVQ 748 + + + Sbjct: 309 IEHDELVSVAE 319 >01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317, 4892407-4892574,4892674-4892841,4892924-4893004, 4893105-4893171,4893657-4893751,4894027-4894099, 4894177-4894247,4894325-4894374,4895263-4895375, 4895461-4895513 Length = 505 Score = 54.0 bits (124), Expect = 1e-07 Identities = 27/88 (30%), Positives = 47/88 (53%) Frame = +3 Query: 255 SRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 434 S +E LG + +L+ A TT N S + R++ +G V AS +RE + Y+ A + Sbjct: 108 SVHEAPETLGATQLLKKMAYTTTTNRSHLRVVREIEAVGGNVKASANREMMSYSYAALKT 167 Query: 435 KLNDALEILNNLVSNQEFRPWELNEMLL 518 + + +E+L + V N F WE+ E ++ Sbjct: 168 YMPEMVEVLIDCVRNPAFLDWEVKEQIM 195 >12_02_0312 + 17395716-17398112 Length = 798 Score = 30.7 bits (66), Expect = 1.4 Identities = 16/63 (25%), Positives = 36/63 (57%) Frame = +3 Query: 294 VLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLV 473 +++S +G + K ++ +Q+KL ++ SGD+ ++ + + D +ND E++N L Sbjct: 238 IIQSDSGESNKQLTLEALQKKLHEL------SGDKRYLLVLDDISHDNINDWEELMNLLP 291 Query: 474 SNQ 482 S + Sbjct: 292 SGR 294 >02_04_0060 - 19345316-19345453,19345718-19345849,19345937-19346005, 19346453-19346551,19346702-19346786,19346890-19346990, 19347294-19347362,19347635-19347675,19348343-19348458, 19348546-19348702,19349266-19349474,19349811-19349914, 19350234-19350381,19350463-19350761,19350844-19351377 Length = 766 Score = 30.7 bits (66), Expect = 1.4 Identities = 19/66 (28%), Positives = 31/66 (46%) Frame = +3 Query: 453 EILNNLVSNQEFRPWELNEMLLV*NMILFLYHPKFVL*ICSIRQPIVVDWVTRSSSRQRG 632 ++ ++ Q+F P L E L ++ L HP VL + ++ QP + VT SR Sbjct: 537 DVAVKILMEQDFHPERLKEFLREVAIMKSLRHPNIVLFMGAVTQPPKLSIVTEYLSRGSL 596 Query: 633 LMIFHQ 650 I H+ Sbjct: 597 YRILHK 602 >01_05_0515 - 22884642-22885160 Length = 172 Score = 29.1 bits (62), Expect = 4.4 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = +1 Query: 121 GYAQAAPAVKKDVRIQSSV-LPNKTFVAALDNGSPVTRVTIAFKAGLVMNHKL 276 G A+ A +D R+++ + + + A D GS + AF G+V++H++ Sbjct: 112 GAAEVVMATMEDARVEAEMQMEMEKERARWDRGSAIAAAVAAFALGVVVSHRI 164 >11_06_0545 + 24839536-24843421,24843871-24844310 Length = 1441 Score = 28.7 bits (61), Expect = 5.8 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +3 Query: 390 GDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWE 500 GD +FI +E+ Q L DA + NN S+Q+ W+ Sbjct: 29 GDVQFIKDEMESMQGFLLDAADAANNNSSSQQVLAWQ 65 >01_06_0430 + 29299970-29300031,29300162-29300294,29301057-29301160, 29302201-29302372,29302488-29302628,29302707-29303055, 29303133-29305477 Length = 1101 Score = 28.7 bits (61), Expect = 5.8 Identities = 18/76 (23%), Positives = 35/76 (46%) Frame = +1 Query: 82 TLVAPFIRHVTIRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGLV 261 T +A +H T + Y + A +VR S V ++ + L G+P T+ I + Sbjct: 124 TELADVRKHFTSK-YGKEFAAAALEVRPDSGV--SRLVIEKLSAGAPDTQTKIKTLTSIA 180 Query: 262 MNHKLNWDCRMYYDQL 309 H + W+ + + ++L Sbjct: 181 EEHNIKWEPKAFEEKL 196 >07_03_0327 + 16817149-16817438,16818029-16818224,16818309-16819642, 16819925-16820097,16820257-16820503,16820599-16820893, 16820934-16820982,16821357-16821562 Length = 929 Score = 28.3 bits (60), Expect = 7.6 Identities = 14/61 (22%), Positives = 29/61 (47%) Frame = +3 Query: 276 ELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALE 455 E+ + +LRS + +K I + + + I D +F+Y +LE + L D ++ Sbjct: 515 EVAVKRLLRSHNDIASKEIENLIASDQDPNIVRMYGFEQDNDFVYISLERCRCSLADLIQ 574 Query: 456 I 458 + Sbjct: 575 L 575 >05_04_0226 + 19215091-19215172,19215281-19215394,19215508-19215590, 19215682-19215820,19215862-19216191,19216414-19216693, 19216795-19216956,19217134-19217349,19217458-19217495, 19217597-19217760,19217833-19217946,19218042-19218083, 19218180-19218983 Length = 855 Score = 28.3 bits (60), Expect = 7.6 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = +1 Query: 73 ASKTLVAPFIRHVTIRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDN 213 A + + P IRH+ ++ +++ AV R Q S+ P+K V+ L + Sbjct: 673 ARRVSLTPVIRHIPLQPKRRSSLAVLPTQREQLSIFPDKRSVSRLSH 719 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,269,947 Number of Sequences: 37544 Number of extensions: 432792 Number of successful extensions: 906 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 882 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 906 length of database: 14,793,348 effective HSP length: 81 effective length of database: 11,752,284 effective search space used: 2209429392 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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