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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1477
         (809 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0648 - 30844289-30844341,30844536-30844648,30845435-308454...    58   1e-08
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948...    54   1e-07
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489...    54   1e-07
12_02_0312 + 17395716-17398112                                         31   1.4  
02_04_0060 - 19345316-19345453,19345718-19345849,19345937-193460...    31   1.4  
01_05_0515 - 22884642-22885160                                         29   4.4  
11_06_0545 + 24839536-24843421,24843871-24844310                       29   5.8  
01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011...    29   5.8  
07_03_0327 + 16817149-16817438,16818029-16818224,16818309-168196...    28   7.6  
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155...    28   7.6  

>01_06_0648 -
           30844289-30844341,30844536-30844648,30845435-30845484,
           30845572-30845642,30845725-30845797,30846744-30846841,
           30846936-30847002,30847150-30847230,30847312-30847479,
           30847563-30847730,30847813-30848109,30848205-30848426,
           30849287-30849325
          Length = 499

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 33/87 (37%), Positives = 47/87 (54%)
 Frame = +3

Query: 255 SRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 434
           S YE  A  G SH+L   A  +T N S   + R++  IG  VSAS  RE + YT +A + 
Sbjct: 101 SIYETPASSGASHLLERMAFKSTTNRSHLRLVREVEAIGGNVSASASREQMCYTYDAFKA 160

Query: 435 KLNDALEILNNLVSNQEFRPWELNEML 515
            + + +E+L + V N  F  WE+ E L
Sbjct: 161 YVPEMVEVLIDSVRNPAFFNWEIKEQL 187


>05_06_0132 +
           25893241-25893435,25894266-25894487,25894567-25894863,
           25894944-25895111,25895201-25895368,25895456-25895536,
           25895704-25895770,25895874-25895971,25896587-25896659,
           25896753-25896823,25896919-25896968,25897698-25897810,
           25898182-25898300,25898629-25898721,25899025-25899051,
           25899422-25899823,25900467-25900513,25900612-25900651,
           25900733-25900795,25900881-25901018,25901873-25902031,
           25902111-25902164,25902324-25902392,25902514-25902643,
           25902909-25902949,25903133-25903178,25903200-25903357,
           25903560-25903605,25903702-25903853,25904022-25904243
          Length = 1202

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 31/87 (35%), Positives = 45/87 (51%)
 Frame = +3

Query: 255 SRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 434
           S YE  +  G SH+L   A  +T N S   + R++  IG  V AS  RE + YT +A + 
Sbjct: 153 SVYETSSSSGTSHLLERMAFKSTTNRSHLRLVREVEAIGGNVFASASREQMSYTYDALKC 212

Query: 435 KLNDALEILNNLVSNQEFRPWELNEML 515
              + +E+L + V N  F  WE+ E L
Sbjct: 213 YAPEMVEVLIDSVRNPAFLEWEVKEQL 239



 Score = 33.1 bits (72), Expect = 0.27
 Identities = 17/71 (23%), Positives = 29/71 (40%)
 Frame = +2

Query: 536 ISLPPQIRAVDLLHKAAYRRGLGNSLFISPKRINDISSESLQLFASQNITPSRCAVTVIG 715
           +S  P    ++ LH A Y   L   L  S   +N +   +L+ F S+N T  R  +   G
Sbjct: 249 VSGDPHGLLMEALHSAGYSGALAKPLMASESAVNRLDVATLEEFVSENYTAPRMVLAASG 308

Query: 716 DSQERAALIVQ 748
              +    + +
Sbjct: 309 IEHDELVSVAE 319


>01_01_0645 +
           4890647-4890682,4891684-4891929,4892021-4892317,
           4892407-4892574,4892674-4892841,4892924-4893004,
           4893105-4893171,4893657-4893751,4894027-4894099,
           4894177-4894247,4894325-4894374,4895263-4895375,
           4895461-4895513
          Length = 505

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 27/88 (30%), Positives = 47/88 (53%)
 Frame = +3

Query: 255 SRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 434
           S +E    LG + +L+  A  TT N S   + R++  +G  V AS +RE + Y+  A + 
Sbjct: 108 SVHEAPETLGATQLLKKMAYTTTTNRSHLRVVREIEAVGGNVKASANREMMSYSYAALKT 167

Query: 435 KLNDALEILNNLVSNQEFRPWELNEMLL 518
            + + +E+L + V N  F  WE+ E ++
Sbjct: 168 YMPEMVEVLIDCVRNPAFLDWEVKEQIM 195


>12_02_0312 + 17395716-17398112
          Length = 798

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/63 (25%), Positives = 36/63 (57%)
 Frame = +3

Query: 294 VLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLV 473
           +++S +G + K ++   +Q+KL ++      SGD+ ++    + + D +ND  E++N L 
Sbjct: 238 IIQSDSGESNKQLTLEALQKKLHEL------SGDKRYLLVLDDISHDNINDWEELMNLLP 291

Query: 474 SNQ 482
           S +
Sbjct: 292 SGR 294


>02_04_0060 -
           19345316-19345453,19345718-19345849,19345937-19346005,
           19346453-19346551,19346702-19346786,19346890-19346990,
           19347294-19347362,19347635-19347675,19348343-19348458,
           19348546-19348702,19349266-19349474,19349811-19349914,
           19350234-19350381,19350463-19350761,19350844-19351377
          Length = 766

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +3

Query: 453 EILNNLVSNQEFRPWELNEMLLV*NMILFLYHPKFVL*ICSIRQPIVVDWVTRSSSRQRG 632
           ++   ++  Q+F P  L E L    ++  L HP  VL + ++ QP  +  VT   SR   
Sbjct: 537 DVAVKILMEQDFHPERLKEFLREVAIMKSLRHPNIVLFMGAVTQPPKLSIVTEYLSRGSL 596

Query: 633 LMIFHQ 650
             I H+
Sbjct: 597 YRILHK 602


>01_05_0515 - 22884642-22885160
          Length = 172

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 121 GYAQAAPAVKKDVRIQSSV-LPNKTFVAALDNGSPVTRVTIAFKAGLVMNHKL 276
           G A+   A  +D R+++ + +  +   A  D GS +     AF  G+V++H++
Sbjct: 112 GAAEVVMATMEDARVEAEMQMEMEKERARWDRGSAIAAAVAAFALGVVVSHRI 164


>11_06_0545 + 24839536-24843421,24843871-24844310
          Length = 1441

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 390 GDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWE 500
           GD +FI   +E+ Q  L DA +  NN  S+Q+   W+
Sbjct: 29  GDVQFIKDEMESMQGFLLDAADAANNNSSSQQVLAWQ 65


>01_06_0430 +
           29299970-29300031,29300162-29300294,29301057-29301160,
           29302201-29302372,29302488-29302628,29302707-29303055,
           29303133-29305477
          Length = 1101

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/76 (23%), Positives = 35/76 (46%)
 Frame = +1

Query: 82  TLVAPFIRHVTIRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGLV 261
           T +A   +H T + Y +   A   +VR  S V  ++  +  L  G+P T+  I     + 
Sbjct: 124 TELADVRKHFTSK-YGKEFAAAALEVRPDSGV--SRLVIEKLSAGAPDTQTKIKTLTSIA 180

Query: 262 MNHKLNWDCRMYYDQL 309
             H + W+ + + ++L
Sbjct: 181 EEHNIKWEPKAFEEKL 196


>07_03_0327 +
           16817149-16817438,16818029-16818224,16818309-16819642,
           16819925-16820097,16820257-16820503,16820599-16820893,
           16820934-16820982,16821357-16821562
          Length = 929

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = +3

Query: 276 ELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALE 455
           E+ +  +LRS   + +K I + +   +   I        D +F+Y +LE  +  L D ++
Sbjct: 515 EVAVKRLLRSHNDIASKEIENLIASDQDPNIVRMYGFEQDNDFVYISLERCRCSLADLIQ 574

Query: 456 I 458
           +
Sbjct: 575 L 575


>05_04_0226 +
           19215091-19215172,19215281-19215394,19215508-19215590,
           19215682-19215820,19215862-19216191,19216414-19216693,
           19216795-19216956,19217134-19217349,19217458-19217495,
           19217597-19217760,19217833-19217946,19218042-19218083,
           19218180-19218983
          Length = 855

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +1

Query: 73  ASKTLVAPFIRHVTIRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDN 213
           A +  + P IRH+ ++   +++ AV    R Q S+ P+K  V+ L +
Sbjct: 673 ARRVSLTPVIRHIPLQPKRRSSLAVLPTQREQLSIFPDKRSVSRLSH 719


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,269,947
Number of Sequences: 37544
Number of extensions: 432792
Number of successful extensions: 906
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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