Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1477
(809 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36) 35 0.090
SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14) 31 1.1
SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0) 31 1.1
SB_46908| Best HMM Match : MORN (HMM E-Value=2.52234e-44) 29 3.4
SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_55702| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_45715| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_19455| Best HMM Match : Amino_oxidase (HMM E-Value=0.0003) 28 7.8
SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_14735| Best HMM Match : Sushi (HMM E-Value=1.8e-07) 28 7.8
SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28) 28 7.8
SB_53446| Best HMM Match : Neur_chan_memb (HMM E-Value=0.038) 28 7.8
>SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)
Length = 888
Score = 34.7 bits (76), Expect = 0.090
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = +3
Query: 255 SRYEPQAELGLSHVLRSAAGLTTKNISSF-LIQRKLSQIGAYVSASGDREFIYYTLEATQ 431
SRYE G++HV+ A +T S I ++L +G + R+ I Y +
Sbjct: 448 SRYEVDHPNGVTHVIEKMAFQSTAKFPSHDDIMQELEPVGGMADCTSFRDAIVYGTSSFT 507
Query: 432 DKLNDALEILNNLVSNQEFRPWELNEMLLV 521
L A+E+L+ V + E++E ++
Sbjct: 508 SGLPLAVEVLSEAVMRPQITSQEVDEQKML 537
>SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)
Length = 593
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 255 SRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIG 371
SRYE + LG++H+LR+AA L + ++++ +G
Sbjct: 61 SRYETDSNLGITHMLRNAAYLLLDFKGKHFVGKRMALVG 99
>SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1296
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +3
Query: 3 REDSVNHKPLLRYYLKFLKTYENGIQNSRRPLYSSCYDQGLRPSCAGSKER 155
R D VN + L L+ + E GI RR LYS C+D+ +R ER
Sbjct: 135 RLDVVNLQEQLDMRLQQRQARETGICPVRRELYSQCFDELIRQVTINCAER 185
>SB_46908| Best HMM Match : MORN (HMM E-Value=2.52234e-44)
Length = 241
Score = 29.5 bits (63), Expect = 3.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -1
Query: 272 LWFITRPALKAIVTRVTGEPLSKAA 198
LW RP ++A+V R+ G+P+++ A
Sbjct: 149 LWVSGRPEMEAVVLRIVGKPVAEVA 173
>SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 29.5 bits (63), Expect = 3.4
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +2
Query: 572 LHKAAYRRGLGNSLFISPKRINDISSESLQLFASQNITPSRCAVTVIGDSQERAALIVQT 751
LH A RR S I+ R + ES+++ A QN+ PSR A G S + A+ +T
Sbjct: 83 LHMDA-RRKESRSDIIAKNRSLTLDGESIRITAKQNVPPSRSA-QFAGQSIQITAIATKT 140
>SB_55702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 628 LWRDEERVTQSTTIGCLMEQIYSTNLG 548
LWRDE R T+ T+G + ST++G
Sbjct: 45 LWRDENRRTRRKTLGAKVRPTNSTHVG 71
>SB_45715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 628 LWRDEERVTQSTTIGCLMEQIYSTNLG 548
LWRDE R T+ T+G + ST++G
Sbjct: 70 LWRDENRRTRRKTLGAKVRPTNSTHVG 96
>SB_19455| Best HMM Match : Amino_oxidase (HMM E-Value=0.0003)
Length = 658
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 628 LWRDEERVTQSTTIGCLMEQIYSTNLG 548
LWRDE R T+ T+G ST++G
Sbjct: 599 LWRDENRRTRRKTLGAKARPTNSTHVG 625
>SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 628 LWRDEERVTQSTTIGCLMEQIYSTNLG 548
LWRDE R T+ T+G ST++G
Sbjct: 57 LWRDENRRTRRKTLGAKARPTNSTHVG 83
>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1277
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 628 LWRDEERVTQSTTIGCLMEQIYSTNLG 548
LWRDE R T+ T+G ST++G
Sbjct: 1248 LWRDENRRTRRKTLGAKARPTNSTHVG 1274
>SB_14735| Best HMM Match : Sushi (HMM E-Value=1.8e-07)
Length = 305
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 628 LWRDEERVTQSTTIGCLMEQIYSTNLG 548
LWRDE R T+ T+G ST++G
Sbjct: 77 LWRDENRRTRRKTLGAKARPTNSTHVG 103
>SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28)
Length = 336
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 628 LWRDEERVTQSTTIGCLMEQIYSTNLG 548
LWRDE R T+ T+G ST++G
Sbjct: 285 LWRDENRRTRRKTLGAKARPTNSTHVG 311
>SB_53446| Best HMM Match : Neur_chan_memb (HMM E-Value=0.038)
Length = 406
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 628 LWRDEERVTQSTTIGCLMEQIYSTNLG 548
LWRDE R T+ T+G ST++G
Sbjct: 355 LWRDENRRTRRKTLGAKARPTNSTHVG 381
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,533,759
Number of Sequences: 59808
Number of extensions: 510276
Number of successful extensions: 1054
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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