Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1477
(809 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
J04973-1|AAA35710.1| 453|Homo sapiens protein ( Human cytochrom... 69 2e-11
BC003136-1|AAH03136.1| 453|Homo sapiens ubiquinol-cytochrome c ... 69 2e-11
BC000484-1|AAH00484.1| 453|Homo sapiens UQCRC2 protein protein. 69 2e-11
L16842-1|AAA20046.1| 480|Homo sapiens ubiquinol-cytochrome c re... 43 0.001
D26485-1|BAA05495.1| 480|Homo sapiens core I protein protein. 43 0.001
BC009586-1|AAH09586.1| 480|Homo sapiens ubiquinol-cytochrome c ... 43 0.001
BC010398-1|AAH10398.1| 490|Homo sapiens PMPCB protein protein. 42 0.002
BC014079-1|AAH14079.2| 480|Homo sapiens PMPCB protein protein. 40 0.014
BC046117-1|AAH46117.1| 258|Homo sapiens DNALI1 protein protein. 31 4.9
BC039074-1|AAH39074.1| 258|Homo sapiens DNALI1 protein protein. 31 4.9
AL034379-10|CAI20553.1| 280|Homo sapiens dynein, axonemal, ligh... 31 4.9
>J04973-1|AAA35710.1| 453|Homo sapiens protein ( Human cytochrome
bc-1 complex core protein II mRNA, complete cds. ).
Length = 453
Score = 69.3 bits (162), Expect = 2e-11
Identities = 33/90 (36%), Positives = 55/90 (61%)
Frame = +3
Query: 243 LQSWSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLE 422
+++ SRYE + LG +H+LR + LTTK SSF I R + +G +S + RE + YT+E
Sbjct: 65 IKAGSRYEDFSNLGTTHLLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVE 124
Query: 423 ATQDKLNDALEILNNLVSNQEFRPWELNEM 512
+ ++ +E L N+ + EFR WE+ ++
Sbjct: 125 CLRGDVDILMEFLLNVTTAPEFRRWEVADL 154
Score = 33.1 bits (72), Expect = 1.2
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +1
Query: 115 IRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAG 255
++ A A A + ++ + LPN +A+L+N SPV+R+ + KAG
Sbjct: 22 VKATAAPAGAPPQPQDLEFTKLPNGLVIASLENYSPVSRIGLFIKAG 68
>BC003136-1|AAH03136.1| 453|Homo sapiens ubiquinol-cytochrome c
reductase core protein II protein.
Length = 453
Score = 69.3 bits (162), Expect = 2e-11
Identities = 33/90 (36%), Positives = 55/90 (61%)
Frame = +3
Query: 243 LQSWSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLE 422
+++ SRYE + LG +H+LR + LTTK SSF I R + +G +S + RE + YT+E
Sbjct: 65 IKAGSRYEDFSNLGTTHLLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVE 124
Query: 423 ATQDKLNDALEILNNLVSNQEFRPWELNEM 512
+ ++ +E L N+ + EFR WE+ ++
Sbjct: 125 CLRGDVDILMEFLLNVTTAPEFRRWEVADL 154
Score = 33.1 bits (72), Expect = 1.2
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +1
Query: 115 IRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAG 255
++ A A A + ++ + LPN +A+L+N SPV+R+ + KAG
Sbjct: 22 VKATAAPAGAPPQPQDLEFTKLPNGLVIASLENYSPVSRIGLFIKAG 68
>BC000484-1|AAH00484.1| 453|Homo sapiens UQCRC2 protein protein.
Length = 453
Score = 69.3 bits (162), Expect = 2e-11
Identities = 33/90 (36%), Positives = 55/90 (61%)
Frame = +3
Query: 243 LQSWSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLE 422
+++ SRYE + LG +H+LR + LTTK SSF I R + +G +S + RE + YT+E
Sbjct: 65 IKAGSRYEDFSNLGTTHLLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVE 124
Query: 423 ATQDKLNDALEILNNLVSNQEFRPWELNEM 512
+ ++ +E L N+ + EFR WE+ ++
Sbjct: 125 CLRGDVDILMEFLLNVTTAPEFRRWEVADL 154
Score = 33.1 bits (72), Expect = 1.2
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +1
Query: 115 IRGYAQAAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAG 255
++ A A A + ++ + LPN +A+L+N SPV+R+ + KAG
Sbjct: 22 VKATAAPAGAPPQPQDLEFTKLPNGLVIASLENYSPVSRIGLFIKAG 68
>L16842-1|AAA20046.1| 480|Homo sapiens ubiquinol-cytochrome c
reductase core I protein protein.
Length = 480
Score = 43.2 bits (97), Expect = 0.001
Identities = 22/75 (29%), Positives = 40/75 (53%)
Frame = +3
Query: 255 SRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 434
SR+E + G + L A TKN +++++ +GA+++A RE Y ++A
Sbjct: 79 SRFETEKNNGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSK 138
Query: 435 KLNDALEILNNLVSN 479
L A+E+L ++V N
Sbjct: 139 DLPKAVELLGDIVQN 153
>D26485-1|BAA05495.1| 480|Homo sapiens core I protein protein.
Length = 480
Score = 43.2 bits (97), Expect = 0.001
Identities = 22/75 (29%), Positives = 40/75 (53%)
Frame = +3
Query: 255 SRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 434
SR+E + G + L A TKN +++++ +GA+++A RE Y ++A
Sbjct: 79 SRFETEKNNGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSK 138
Query: 435 KLNDALEILNNLVSN 479
L A+E+L ++V N
Sbjct: 139 DLPKAVELLGDIVQN 153
>BC009586-1|AAH09586.1| 480|Homo sapiens ubiquinol-cytochrome c
reductase core protein I protein.
Length = 480
Score = 43.2 bits (97), Expect = 0.001
Identities = 22/75 (29%), Positives = 40/75 (53%)
Frame = +3
Query: 255 SRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 434
SR+E + G + L A TKN +++++ +GA+++A RE Y ++A
Sbjct: 79 SRFETEKNNGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSK 138
Query: 435 KLNDALEILNNLVSN 479
L A+E+L ++V N
Sbjct: 139 DLPKAVELLGDIVQN 153
>BC010398-1|AAH10398.1| 490|Homo sapiens PMPCB protein protein.
Length = 490
Score = 42.3 bits (95), Expect = 0.002
Identities = 24/79 (30%), Positives = 41/79 (51%)
Frame = +3
Query: 243 LQSWSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLE 422
+ + SRYE + G +H L A TK S ++ ++ +GA+++A RE Y +
Sbjct: 85 IDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAK 144
Query: 423 ATQDKLNDALEILNNLVSN 479
A L A+EIL +++ N
Sbjct: 145 AFSKDLPRAVEILADIIQN 163
>BC014079-1|AAH14079.2| 480|Homo sapiens PMPCB protein protein.
Length = 480
Score = 39.5 bits (88), Expect = 0.014
Identities = 23/79 (29%), Positives = 40/79 (50%)
Frame = +3
Query: 243 LQSWSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLE 422
+ + SRYE + G +H A TK S ++ ++ +GA+++A RE Y +
Sbjct: 76 IDAGSRYENEKNNGTAHFPEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAK 135
Query: 423 ATQDKLNDALEILNNLVSN 479
A L A+EIL +++ N
Sbjct: 136 AFSKDLPRAVEILADIIQN 154
>BC046117-1|AAH46117.1| 258|Homo sapiens DNALI1 protein protein.
Length = 258
Score = 31.1 bits (67), Expect = 4.9
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 2/165 (1%)
Frame = +3
Query: 3 REDSVNHKPLLRYYLKFLKTYENGIQNSRRPLYSSCYDQGLRPSCAGSKERC*DPIKCFT 182
R D V+ + L L+ + E GI RR LYS C+D+ +R ER ++
Sbjct: 96 RMDVVHLQEQLDLKLQQRQARETGICPVRRELYSQCFDELIREVTINCAERGLLLLR--- 152
Query: 183 *QDVRSCFRQRFPSYPC--HNRLQSWSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRK 356
VR R +Y + + R QAE G S + R A L T+ ++R+
Sbjct: 153 ---VRDEIRMTIAAYQTLYESSVAFGMRKALQAEQGKSDMERKIAELETEKRD---LERQ 206
Query: 357 LSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFR 491
+++ A A+ RE +E + K N+ ++ L +NQ+ +
Sbjct: 207 VNEQKAKCEATEKRESERRQVE--EKKHNEEIQFLKR--TNQQLK 247
>BC039074-1|AAH39074.1| 258|Homo sapiens DNALI1 protein protein.
Length = 258
Score = 31.1 bits (67), Expect = 4.9
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 2/165 (1%)
Frame = +3
Query: 3 REDSVNHKPLLRYYLKFLKTYENGIQNSRRPLYSSCYDQGLRPSCAGSKERC*DPIKCFT 182
R D V+ + L L+ + E GI RR LYS C+D+ +R ER ++
Sbjct: 96 RMDVVHLQEQLDLKLQQRQARETGICPVRRELYSQCFDELIREVTINCAERGLLLLR--- 152
Query: 183 *QDVRSCFRQRFPSYPC--HNRLQSWSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRK 356
VR R +Y + + R QAE G S + R A L T+ ++R+
Sbjct: 153 ---VRDEIRMTIAAYQTLYESSVAFGMRKALQAEQGKSDMERKIAELETEKRD---LERQ 206
Query: 357 LSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFR 491
+++ A A+ RE +E + K N+ ++ L +NQ+ +
Sbjct: 207 VNEQKAKCEATEKRESERRQVE--EKKHNEEIQFLKR--TNQQLK 247
>AL034379-10|CAI20553.1| 280|Homo sapiens dynein, axonemal, light
intermediate chain 1 protein.
Length = 280
Score = 31.1 bits (67), Expect = 4.9
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 2/165 (1%)
Frame = +3
Query: 3 REDSVNHKPLLRYYLKFLKTYENGIQNSRRPLYSSCYDQGLRPSCAGSKERC*DPIKCFT 182
R D V+ + L L+ + E GI RR LYS C+D+ +R ER ++
Sbjct: 118 RMDVVHLQEQLDLKLQQRQARETGICPVRRELYSQCFDELIREVTINCAERGLLLLR--- 174
Query: 183 *QDVRSCFRQRFPSYPC--HNRLQSWSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRK 356
VR R +Y + + R QAE G S + R A L T+ ++R+
Sbjct: 175 ---VRDEIRMTIAAYQTLYESSVAFGMRKALQAEQGKSDMERKIAELETEKRD---LERQ 228
Query: 357 LSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFR 491
+++ A A+ RE +E + K N+ ++ L +NQ+ +
Sbjct: 229 VNEQKAKCEATEKRESERRQVE--EKKHNEEIQFLKR--TNQQLK 269
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,212,211
Number of Sequences: 237096
Number of extensions: 2341026
Number of successful extensions: 4300
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4300
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10036353240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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