Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1477
(809 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72514-2|CAA96675.2| 422|Caenorhabditis elegans Hypothetical pr... 52 5e-07
Z67734-5|CAD56227.1| 424|Caenorhabditis elegans Hypothetical pr... 48 6e-06
Z67734-4|CAB54182.1| 410|Caenorhabditis elegans Hypothetical pr... 48 6e-06
AL032678-2|CAC35829.2| 424|Caenorhabditis elegans Hypothetical ... 48 6e-06
AL032678-1|CAB54320.1| 410|Caenorhabditis elegans Hypothetical ... 48 6e-06
AF100306-6|AAC68920.1| 427|Caenorhabditis elegans Hypothetical ... 44 2e-04
Z68270-1|CAA92566.2| 458|Caenorhabditis elegans Hypothetical pr... 40 0.002
U13644-8|AAB52679.1| 471|Caenorhabditis elegans Hypothetical pr... 31 0.74
Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical p... 29 3.0
Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr... 29 3.0
AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical... 29 3.0
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 29 3.9
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu... 29 5.2
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein. 29 5.2
>Z72514-2|CAA96675.2| 422|Caenorhabditis elegans Hypothetical
protein T10B10.2 protein.
Length = 422
Score = 52.0 bits (119), Expect = 5e-07
Identities = 25/87 (28%), Positives = 43/87 (49%)
Frame = +3
Query: 255 SRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 434
SRYE + GLSH +R+ G T+ + LSQ G + + R+ +L ++
Sbjct: 53 SRYEKANQAGLSHTIRNFVGRDTQEYFGNTVVWTLSQTGGVLKSFTSRDLFGVSLTIPRE 112
Query: 435 KLNDALEILNNLVSNQEFRPWELNEML 515
+ L +L + N F+PWE+ ++L
Sbjct: 113 STSVGLSVLGQVAGNPGFKPWEVEDVL 139
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +2
Query: 563 VDLLHKAAYRRG-LGNSLFISPKRINDISSESLQLFASQN 679
VD +HKAAYR G LGNS++ +I I + +L FA Q+
Sbjct: 156 VDQIHKAAYRNGGLGNSIYAPCSKIGSICTSTLSSFAEQH 195
>Z67734-5|CAD56227.1| 424|Caenorhabditis elegans Hypothetical
protein VW06B3R.1b protein.
Length = 424
Score = 48.4 bits (110), Expect = 6e-06
Identities = 22/86 (25%), Positives = 45/86 (52%)
Frame = +3
Query: 255 SRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 434
SRY+P + GL+H++R++ G N + +Q G ++A +R+ + + +D
Sbjct: 70 SRYQPANKQGLTHLIRNSVGRDAPNFPGLALVWNTAQNGGNLTAVSNRDVLAIEVNVVRD 129
Query: 435 KLNDALEILNNLVSNQEFRPWELNEM 512
+ L +L L N F+PW++ ++
Sbjct: 130 QSAVVLSLLGQL-GNNAFKPWDVEDV 154
>Z67734-4|CAB54182.1| 410|Caenorhabditis elegans Hypothetical
protein VW06B3R.1a protein.
Length = 410
Score = 48.4 bits (110), Expect = 6e-06
Identities = 22/86 (25%), Positives = 45/86 (52%)
Frame = +3
Query: 255 SRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 434
SRY+P + GL+H++R++ G N + +Q G ++A +R+ + + +D
Sbjct: 56 SRYQPANKQGLTHLIRNSVGRDAPNFPGLALVWNTAQNGGNLTAVSNRDVLAIEVNVVRD 115
Query: 435 KLNDALEILNNLVSNQEFRPWELNEM 512
+ L +L L N F+PW++ ++
Sbjct: 116 QSAVVLSLLGQL-GNNAFKPWDVEDV 140
>AL032678-2|CAC35829.2| 424|Caenorhabditis elegans Hypothetical
protein VW06B3R.1b protein.
Length = 424
Score = 48.4 bits (110), Expect = 6e-06
Identities = 22/86 (25%), Positives = 45/86 (52%)
Frame = +3
Query: 255 SRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 434
SRY+P + GL+H++R++ G N + +Q G ++A +R+ + + +D
Sbjct: 70 SRYQPANKQGLTHLIRNSVGRDAPNFPGLALVWNTAQNGGNLTAVSNRDVLAIEVNVVRD 129
Query: 435 KLNDALEILNNLVSNQEFRPWELNEM 512
+ L +L L N F+PW++ ++
Sbjct: 130 QSAVVLSLLGQL-GNNAFKPWDVEDV 154
>AL032678-1|CAB54320.1| 410|Caenorhabditis elegans Hypothetical
protein VW06B3R.1a protein.
Length = 410
Score = 48.4 bits (110), Expect = 6e-06
Identities = 22/86 (25%), Positives = 45/86 (52%)
Frame = +3
Query: 255 SRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 434
SRY+P + GL+H++R++ G N + +Q G ++A +R+ + + +D
Sbjct: 56 SRYQPANKQGLTHLIRNSVGRDAPNFPGLALVWNTAQNGGNLTAVSNRDVLAIEVNVVRD 115
Query: 435 KLNDALEILNNLVSNQEFRPWELNEM 512
+ L +L L N F+PW++ ++
Sbjct: 116 QSAVVLSLLGQL-GNNAFKPWDVEDV 140
>AF100306-6|AAC68920.1| 427|Caenorhabditis elegans Hypothetical
protein T24C4.1 protein.
Length = 427
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/86 (25%), Positives = 42/86 (48%)
Frame = +3
Query: 255 SRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 434
SRYE + GL H +R+ G ++ + + GA +++ R+ + +D
Sbjct: 52 SRYEKVTQPGLVHHVRNFVGRDAQSYPGLQLVWSSAASGANLNSFATRDIFGVQISVARD 111
Query: 435 KLNDALEILNNLVSNQEFRPWELNEM 512
+ AL IL ++ + F+PWEL ++
Sbjct: 112 QAAYALSILGHVAAKPAFKPWELEDV 137
>Z68270-1|CAA92566.2| 458|Caenorhabditis elegans Hypothetical
protein ZC410.2 protein.
Length = 458
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/79 (26%), Positives = 43/79 (54%)
Frame = +3
Query: 243 LQSWSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLE 422
+ + SRYE + G +H L A T + ++ ++ IGA+++A RE Y +
Sbjct: 57 IDAGSRYENEKNNGTAHFLEHMAFKGTPRRTRMGLELEVENIGAHLNAYTSRESTTYYAK 116
Query: 423 ATQDKLNDALEILNNLVSN 479
+KL+ +++IL++++ N
Sbjct: 117 CFTEKLDQSVDILSDILLN 135
>U13644-8|AAB52679.1| 471|Caenorhabditis elegans Hypothetical
protein F56D2.1 protein.
Length = 471
Score = 31.5 bits (68), Expect = 0.74
Identities = 17/81 (20%), Positives = 43/81 (53%)
Frame = +3
Query: 243 LQSWSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLE 422
+++ SR+E + G++H L T +S ++ +L+ IGA +++ +R+ ++
Sbjct: 65 IETGSRFENEKNNGVAHFLERLIHKGTGKRASAALESELNAIGAKLNSFTERDQTAVFVQ 124
Query: 423 ATQDKLNDALEILNNLVSNQE 485
A + ++IL +++ N +
Sbjct: 125 AGAQDVEKVVDILADVLRNSK 145
>Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical
protein C24H11.7 protein.
Length = 1820
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Frame = +1
Query: 253 GLVMNHKLNWDCRMYYDQLLD*QPRILVVSLF------NANSLRLEHMLVLLET 396
GLV LN+DC +Y + + ++LV + F A+ L L+ +LV++ET
Sbjct: 525 GLVTEMYLNFDCDLYCGNIFEDLTKLLVENSFPTVGGHTASLLSLDALLVVIET 578
>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical protein
R09E10.7 protein.
Length = 1717
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 18 NHKPLLRYYLKFLKTYENGIQNSRRPLYSSCYDQGLRPSCAGSKERC 158
NH Y+L+ TY+ Q +RP++ DQ P + RC
Sbjct: 1006 NHLSNAAYFLERCPTYQRRFQPGQRPVFPYRDDQAQEPVPESAPNRC 1052
>AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical
protein C24H11.7 protein.
Length = 1820
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Frame = +1
Query: 253 GLVMNHKLNWDCRMYYDQLLD*QPRILVVSLF------NANSLRLEHMLVLLET 396
GLV LN+DC +Y + + ++LV + F A+ L L+ +LV++ET
Sbjct: 525 GLVTEMYLNFDCDLYCGNIFEDLTKLLVENSFPTVGGHTASLLSLDALLVVIET 578
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 29.1 bits (62), Expect = 3.9
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +1
Query: 58 KLTKMASKTLVAPFIRHVTIRGYAQAAP-AVKKDVRIQ---SSVLPNKTFVAALDNGSPV 225
KLT + SK L+ P H T + P VK +Q ++ LP + +V++ N P+
Sbjct: 1030 KLTVLESKKLIKPIKAHTTPTAASNTTPIPVKTTTTLQTTTATTLP-ENYVSSSTN-RPL 1087
Query: 226 TRVTIAFKAG 255
T + I+ K G
Sbjct: 1088 TPIIISMKLG 1097
>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform a protein.
Length = 2886
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 41 LPKVSKNLRKWHPKLSSPPLFVMLRSGATPKLR-RQ*RKMLGSNQVF 178
LP + K L +W+ K ML ATP+LR + +K+L N +F
Sbjct: 113 LPPILKVLVEWYEKYDESLCLSMLSPIATPELRLKLHKKLLAVNYLF 159
>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
Length = 2914
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 41 LPKVSKNLRKWHPKLSSPPLFVMLRSGATPKLR-RQ*RKMLGSNQVF 178
LP + K L +W+ K ML ATP+LR + +K+L N +F
Sbjct: 113 LPPILKVLVEWYEKYDESLCLSMLSPIATPELRLKLHKKLLAVNYLF 159
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,220,300
Number of Sequences: 27780
Number of extensions: 379427
Number of successful extensions: 865
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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