Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1477
         (809 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16480.1 68416.m02103 mitochondrial processing peptidase alph...    58   9e-09
At1g51980.1 68414.m05863 mitochondrial processing peptidase alph...    56   3e-08
At5g03730.2 68418.m00334 serine/threonine protein kinase (CTR1) ...    29   4.8  
At5g03730.1 68418.m00333 serine/threonine protein kinase (CTR1) ...    29   4.8  
At5g24360.1 68418.m02872 protein kinase family protein / Ire1 ho...    28   8.4  
At1g43980.1 68414.m05073 pentatricopeptide (PPR) repeat-containi...    28   8.4  

>At3g16480.1 68416.m02103 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 499

 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 32/87 (36%), Positives = 48/87 (55%)
 Frame = +3

Query: 255 SRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 434
           S YE     G +H+L   A  +T N S F + R++  IG   SAS  RE + YT++A + 
Sbjct: 105 SIYETPQFRGATHLLERMAFKSTLNRSHFRLVREIEAIGGNTSASASREQMGYTIDALKT 164

Query: 435 KLNDALEILNNLVSNQEFRPWELNEML 515
            + + +E+L + V N  F  WE+NE L
Sbjct: 165 YVPEMVEVLIDSVRNPAFLDWEVNEEL 191


>At1g51980.1 68414.m05863 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 503

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 31/87 (35%), Positives = 48/87 (55%)
 Frame = +3

Query: 255 SRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 434
           S YE     G +H+L   A  +T N + F + R++  IG   SAS  RE + YT++A + 
Sbjct: 109 SIYEAPYFHGATHLLERMAFKSTLNRTHFRLVREIEAIGGNTSASASREQMSYTIDALKT 168

Query: 435 KLNDALEILNNLVSNQEFRPWELNEML 515
            + + +E+L + V N  F  WE+NE L
Sbjct: 169 YVPEMVEVLIDSVRNPAFLDWEVNEEL 195


>At5g03730.2 68418.m00334 serine/threonine protein kinase (CTR1)
           identical to serine/threonine-protein kinase CTR1
           [Arabidopsis thaliana] SWISS-PROT:Q05609
          Length = 821

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +3

Query: 453 EILNNLVSNQEFRPWELNEMLLV*NMILFLYHPKFVL*ICSIRQPIVVDWVTRSSSRQRG 632
           ++   ++  Q+F    +NE L    ++  L HP  VL + ++ QP  +  VT   SR   
Sbjct: 574 DVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSL 633

Query: 633 LMIFHQS 653
             + H+S
Sbjct: 634 YRLLHKS 640


>At5g03730.1 68418.m00333 serine/threonine protein kinase (CTR1)
           identical to serine/threonine-protein kinase CTR1
           [Arabidopsis thaliana] SWISS-PROT:Q05609
          Length = 821

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +3

Query: 453 EILNNLVSNQEFRPWELNEMLLV*NMILFLYHPKFVL*ICSIRQPIVVDWVTRSSSRQRG 632
           ++   ++  Q+F    +NE L    ++  L HP  VL + ++ QP  +  VT   SR   
Sbjct: 574 DVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSL 633

Query: 633 LMIFHQS 653
             + H+S
Sbjct: 634 YRLLHKS 640


>At5g24360.1 68418.m02872 protein kinase family protein / Ire1
           homolog-1 (IRE1-1) identical to Ire1 homolog-1
           [Arabidopsis thaliana] GI:15277137; cDNA Ire1 homolog-1
           GI:15277136;
          Length = 881

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +3

Query: 279 LGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQDKLNDAL 452
           + +  +++S   +  K I + +   K S I  +     D  FIY +LE     LND +
Sbjct: 484 VAVKRLVQSHHDVAQKEILNLMASDKHSNIVRWYGVDQDEHFIYISLELCACSLNDLI 541


>At1g43980.1 68414.m05073 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 633

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 407 DEFSVSRSTNICSNLREFALNKE 339
           DE++VS   +ICS+LRE +  K+
Sbjct: 234 DEYTVSMVVSICSDLRELSKGKQ 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,409,197
Number of Sequences: 28952
Number of extensions: 360857
Number of successful extensions: 832
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)