Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1476
(770 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0291 + 32882831-32882998,32883238-32883361,32884528-328845... 77 2e-14
05_05_0229 - 23457438-23457629,23457706-23457828,23457913-234580... 38 0.009
05_01_0489 - 4077365-4077502,4078105-4078227,4079019-4079135,407... 36 0.036
01_01_0474 - 3488739-3488876,3488996-3489118,3489878-3489991,349... 35 0.083
10_08_0532 + 18580579-18580746,18581923-18581997,18582659-185838... 34 0.14
12_01_1031 - 10605581-10606088,10606360-10606420,10606448-106064... 33 0.19
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 32 0.58
07_01_0621 - 4606739-4606894,4606976-4607098,4608199-4608288 31 0.77
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 28 7.2
10_02_0063 - 4849637-4850640,4854341-4854596,4854666-4855340 28 9.5
05_06_0017 + 24964168-24964275,24965384-24965506,24965617-24965751 28 9.5
01_01_0976 + 7711634-7711801,7712741-7713183,7715813-7716251 28 9.5
>03_06_0291 +
32882831-32882998,32883238-32883361,32884528-32884576,
32884672-32884732,32884871-32884917,32885005-32885082,
32885462-32885510
Length = 191
Score = 76.6 bits (180), Expect = 2e-14
Identities = 39/84 (46%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Frame = +1
Query: 517 DEQLIINISFNQLVKLHSIKIKGPADKGPKSIKLFINQPRTLDFDQAAGYSSVQDLELTP 696
DEQL+I+I F Q+VKLHS KGP + GPK+IKLF N+ + F Y L+L+
Sbjct: 71 DEQLLIHIPFMQVVKLHSALFKGPEEDGPKTIKLFCNKEH-MGFSNVNDYPPSDSLDLSS 129
Query: 697 SDL-EGNPVPLKFVKFQSVQTFTL 765
+ L E P+ LK+VKFQ+V++ T+
Sbjct: 130 NHLSESKPMQLKYVKFQNVRSLTI 153
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 398 GHMDLITFITKSECECLNEADDHPLAQAL 484
G +DL+ FI S ECLN+ H + AL
Sbjct: 26 GQVDLVDFIDWSGVECLNQDPAHSIVNAL 54
>05_05_0229 -
23457438-23457629,23457706-23457828,23457913-23458026,
23462062-23462597,23463258-23464545
Length = 750
Score = 37.9 bits (84), Expect = 0.009
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +2
Query: 254 RAMPTFIFYRNRTKIDRLEGGNTTVLENKVRQ 349
RA PTFIF +N +ID+L GGN L+ K Q
Sbjct: 709 RATPTFIFMKNNEEIDKLVGGNHEDLQEKFEQ 740
>05_01_0489 -
4077365-4077502,4078105-4078227,4079019-4079135,
4079243-4079263
Length = 132
Score = 35.9 bits (79), Expect = 0.036
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 254 RAMPTFIFYRNRTKIDRLEGGNTTVLENKVR 346
RA PTF F +N ++D+L G N LE KV+
Sbjct: 96 RATPTFFFIKNEKQVDKLVGANKPELEKKVQ 126
>01_01_0474 -
3488739-3488876,3488996-3489118,3489878-3489991,
3490416-3490452,3490584-3490675,3490878-3490956,
3491640-3491734,3491858-3491991,3492560-3492833,
3493743-3494015,3494976-3495512
Length = 631
Score = 34.7 bits (76), Expect = 0.083
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 254 RAMPTFIFYRNRTKIDRLEGGNTTVLENKV 343
RA PTF F +N ++D+L G N LE KV
Sbjct: 595 RATPTFFFLKNGEQVDKLVGANKPELEKKV 624
>10_08_0532 +
18580579-18580746,18581923-18581997,18582659-18583887,
18584853-18585013,18585272-18585279,18587737-18588768
Length = 890
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 248 GRRAMPTFIFYRNRTKIDRLEGGNTTVLENKVRQYYG-SDVAE 373
G A+P F+F + +D LEG N L NKV + G + VAE
Sbjct: 70 GVTAVPYFVFLKEGKTVDTLEGANPASLANKVAKLAGPASVAE 112
>12_01_1031 - 10605581-10606088,10606360-10606420,10606448-10606491,
10606664-10608382,10609848-10610791
Length = 1091
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 260 MPTFIFYRNRTKIDRLEGGNTTVLENKVRQYYGS 361
+PTF F ++ KID++ G N +L K+R++ S
Sbjct: 1053 VPTFFFVKDGEKIDKIPGANKELLRAKIRRHTAS 1086
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 31.9 bits (69), Expect = 0.58
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 257 AMPTFIFYRNRTKIDRLEGGNTTVLENKVRQYYGS 361
++P+F F RN +ID++ G + LE KV Q+ S
Sbjct: 712 SVPSFFFVRNGKEIDKVVGADKNGLERKVAQHGSS 746
>07_01_0621 - 4606739-4606894,4606976-4607098,4608199-4608288
Length = 122
Score = 31.5 bits (68), Expect = 0.77
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +3
Query: 183 KFPRAVFLKVDVDRCADTASAQGVVQCP 266
KFP AVFLKVDVD + A V P
Sbjct: 56 KFPGAVFLKVDVDELKEVAEKYNVEAMP 83
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 257 AMPTFIFYRNRTKIDRLEGGNTTVLENKVRQYYGSDVA 370
AMPTF+F ++ + D++ G L+N + ++ G+ A
Sbjct: 81 AMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 254 RAMPTFIFYRNRTKIDRLEGGNTTVLENKVRQY 352
R +PTF Y+N T++ + + +LE VR Y
Sbjct: 638 RTVPTFKIYKNGTRVKEMICPSLQLLEYSVRHY 670
>10_02_0063 - 4849637-4850640,4854341-4854596,4854666-4855340
Length = 644
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 377 DEDNTVAGHMDLITFITKSECECLN-EADDHPLAQALTND 493
D+D T+A +D++ + + ECLN + D P +T+D
Sbjct: 591 DKDITLAEDLDVLDGLVRIAVECLNLDVDQRPEMTKVTDD 630
>05_06_0017 + 24964168-24964275,24965384-24965506,24965617-24965751
Length = 121
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 115 QTEMANAGTKLVVVDFTAT 171
Q E AN+ KLVV+DFTA+
Sbjct: 26 QIEEANSAKKLVVIDFTAS 44
>01_01_0976 + 7711634-7711801,7712741-7713183,7715813-7716251
Length = 349
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 580 KGPADKGPKSIKLFINQPRTLDFDQAAGY 666
KGP KG IK I P L DQ AG+
Sbjct: 315 KGPNKKGDLKIKFNIRFPSRLTSDQKAGF 343
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,651,162
Number of Sequences: 37544
Number of extensions: 311575
Number of successful extensions: 712
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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