Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1476
         (770 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)                    101   5e-22
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)           46   4e-05
SB_47083| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   7e-04
SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)       30   2.4  
SB_32906| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  

>SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)
          Length = 308

 Score =  101 bits (243), Expect = 5e-22
 Identities = 48/86 (55%), Positives = 66/86 (76%), Gaps = 2/86 (2%)
 Frame = +1

Query: 514 CDEQLIINISFNQLVKLHSIKIKGPAD-KGPKSIKLFINQPRTLDFDQAAGYSSVQDLEL 690
           CDEQL+I++SFNQ VKLHS+K++ P D + PK +KLFINQ ++LDFD A  + ++Q LEL
Sbjct: 165 CDEQLLISLSFNQPVKLHSMKLQAPNDGQAPKVVKLFINQTKSLDFDSAENFQAIQTLEL 224

Query: 691 TPSDLEGNP-VPLKFVKFQSVQTFTL 765
           TP D++ +  +PLKFVK Q+V   TL
Sbjct: 225 TPEDVQEDVIIPLKFVKLQNVLNLTL 250



 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 38/86 (44%), Positives = 56/86 (65%)
 Frame = +2

Query: 248 GRRAMPTFIFYRNRTKIDRLEGGNTTVLENKVRQYYGSDVAEEDEDNTVAGHMDLITFIT 427
           G  AMPTF F++N+ K+D + G +   LE+ ++++ G D  E+     V GH+DL ++I 
Sbjct: 77  GVTAMPTFQFFKNKVKVDEVRGADPKALEDAIKKWIG-DGEEDGAGCGVKGHVDLNSYIN 135

Query: 428 KSECECLNEADDHPLAQALTNDRGYL 505
           KS CECLNE ++HPL  ALT   G+L
Sbjct: 136 KSGCECLNEDNEHPLNDALTKGPGFL 161



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +1

Query: 79  GLATVIQNDAHFQTEMANAGTKLVVVDFTAT 171
           G   V++ D+ F  E+ NAGTKLVV DFTA+
Sbjct: 7   GNVKVLELDSQFTAELTNAGTKLVVADFTAS 37



 Score = 37.5 bits (83), Expect = 0.012
 Identities = 18/36 (50%), Positives = 24/36 (66%)
 Frame = +3

Query: 159 LYSNLLPAKFPRAVFLKVDVDRCADTASAQGVVQCP 266
           +YS L   K+ +AVFLK+DVD C + A+ QGV   P
Sbjct: 48  VYSGL-SEKYKQAVFLKIDVDVCQELAAKQGVTAMP 82


>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
          Length = 456

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 19/34 (55%), Positives = 24/34 (70%)
 Frame = +2

Query: 248 GRRAMPTFIFYRNRTKIDRLEGGNTTVLENKVRQ 349
           G RAMPTF FY N+ KID L G +   LENK+++
Sbjct: 78  GIRAMPTFHFYHNKAKIDELRGADPGALENKIKE 111



 Score = 37.5 bits (83), Expect = 0.012
 Identities = 15/31 (48%), Positives = 23/31 (74%)
 Frame = +1

Query: 79  GLATVIQNDAHFQTEMANAGTKLVVVDFTAT 171
           G   V+++D+ F  E+  AG++LVV+DFTAT
Sbjct: 8   GNVIVVEDDSFFSVEIERAGSRLVVIDFTAT 38



 Score = 32.7 bits (71), Expect = 0.34
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +3

Query: 174 LPAKFPRAVFLKVDVDRCADTASAQGVVQCP 266
           L  KF   VFLKVDVD+C  TA + G+   P
Sbjct: 53  LSMKFMDVVFLKVDVDQCQLTAESCGIRAMP 83


>SB_47083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +1

Query: 517 DEQLIINISFNQLVKLHS-IKIKGPADKGPKSIKLFINQPRTLDFDQAAGYSSVQDLELT 693
           DE+L+ NI F   VKL + I I G   + P  +KLF N+P  + FD  AG  + Q  EL 
Sbjct: 73  DEELLFNIPFTGSVKLKALIVIGGEGGEHPSEVKLFKNRP-AMTFDD-AGSEAEQSFELH 130

Query: 694 PSDLEGNPVPLKFVKFQSVQTFTL 765
                      K  +F SV   +L
Sbjct: 131 EDRNGSLEYATKVARFSSVNHLSL 154


>SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)
          Length = 1206

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
 Frame = +1

Query: 553 LVKLHSIKIKGP-----ADKGPKSIKLFINQPRTLDFDQAAGYSSVQDLELTPSDLEG-- 711
           L+K+HS   + P      +   K+   +I +    DF     Y +  D +L P+DL+   
Sbjct: 342 LLKIHSAFKRAPLFVVEVEVNSKNTTQYIIKLLPADFSLGGAYYAKNDTKLKPTDLQKRV 401

Query: 712 -NPVPLKFVKFQSVQ 753
            +P+PLK +K  S Q
Sbjct: 402 YHPMPLKELKSYSEQ 416


>SB_32906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 770

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 386 NTVAGHMDLITFITKSECECLNEADDHPLAQALTNDR 496
           +TV    D+ TF    EC C    D H L   +T  R
Sbjct: 230 HTVTVRFDIDTFFIYRECSCFFYCDGHALGAGITRKR 266


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,841,710
Number of Sequences: 59808
Number of extensions: 386634
Number of successful extensions: 833
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)