Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1476
(770 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF143900-1|AAF66677.1| 284|Caenorhabditis elegans thioredoxin-l... 93 2e-19
AF143405-1|AAF66636.1| 284|Caenorhabditis elegans thioredoxin-l... 93 2e-19
AC024810-17|AAF60759.1| 284|Caenorhabditis elegans Hypothetical... 93 2e-19
Z81552-7|CAB04487.2| 606|Caenorhabditis elegans Hypothetical pr... 43 3e-04
AL117201-5|CAB57916.1| 606|Caenorhabditis elegans Hypothetical ... 43 3e-04
AF250925-1|AAF74721.1| 542|Caenorhabditis elegans PNGase protein. 43 3e-04
AC024827-2|AAF60805.2| 254|Caenorhabditis elegans Hypothetical ... 33 0.17
AC006661-10|AAF39887.1| 843|Caenorhabditis elegans Hypothetical... 30 1.6
U23168-7|AAC38808.1| 115|Caenorhabditis elegans Hypothetical pr... 29 4.8
U23168-6|AAP86623.1| 114|Caenorhabditis elegans Hypothetical pr... 29 4.8
DQ241300-1|ABB45864.1| 114|Caenorhabditis elegans TRX-1b protein. 29 4.8
DQ241299-1|ABB45863.1| 115|Caenorhabditis elegans TRX-1a protein. 29 4.8
AL032654-10|CAB63391.1| 819|Caenorhabditis elegans Hypothetical... 28 8.5
AF125951-5|AAL27238.1| 345|Caenorhabditis elegans Hypothetical ... 28 8.5
AF125951-4|AAT68898.1| 342|Caenorhabditis elegans Hypothetical ... 28 8.5
>AF143900-1|AAF66677.1| 284|Caenorhabditis elegans thioredoxin-like
protein protein.
Length = 284
Score = 93.1 bits (221), Expect = 2e-19
Identities = 45/82 (54%), Positives = 58/82 (70%), Gaps = 2/82 (2%)
Frame = +1
Query: 514 CDEQLIINISFNQLVKLHSIKIKGPADKGPKSIKLFINQPRTLDFDQAAGYSSVQDLELT 693
CDEQLII++ FNQ VK+HSI IKG +D+ PK +K+FIN P+T DFD A Q LE
Sbjct: 155 CDEQLIISLPFNQPVKVHSILIKGVSDRAPKKVKVFINLPKTTDFDNATALEPTQMLEFD 214
Query: 694 PSDLEGN--PVPLKFVKFQSVQ 753
S ++G+ V LK+VKFQ+VQ
Sbjct: 215 ESSIQGHGQVVALKYVKFQNVQ 236
Score = 64.1 bits (149), Expect = 1e-10
Identities = 29/79 (36%), Positives = 49/79 (62%)
Frame = +2
Query: 248 GRRAMPTFIFYRNRTKIDRLEGGNTTVLENKVRQYYGSDVAEEDEDNTVAGHMDLITFIT 427
G +MPTF+ +++ ++++++G + LE V++Y + A D+ VAG MDL +
Sbjct: 71 GVNSMPTFMVFQSGVRVEQMKGADAKALETMVKKYADNSAA----DSLVAGQMDLTPLVD 126
Query: 428 KSECECLNEADDHPLAQAL 484
K + ECLNE+DD PL + L
Sbjct: 127 KKQMECLNESDDTPLGRFL 145
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +3
Query: 195 AVFLKVDVDRCADTASAQGVVQCPHSFSTETG 290
AVFLKVDV+ C T+S GV P ++G
Sbjct: 53 AVFLKVDVEICEKTSSENGVNSMPTFMVFQSG 84
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 94 IQNDAHFQTEMANAGTKLVVVDFTA 168
+++D F+ +++ AG K V+VDFTA
Sbjct: 6 VKDDEDFRNQLSLAGLKSVIVDFTA 30
>AF143405-1|AAF66636.1| 284|Caenorhabditis elegans thioredoxin-like
protein TXL protein.
Length = 284
Score = 93.1 bits (221), Expect = 2e-19
Identities = 45/82 (54%), Positives = 58/82 (70%), Gaps = 2/82 (2%)
Frame = +1
Query: 514 CDEQLIINISFNQLVKLHSIKIKGPADKGPKSIKLFINQPRTLDFDQAAGYSSVQDLELT 693
CDEQLII++ FNQ VK+HSI IKG +D+ PK +K+FIN P+T DFD A Q LE
Sbjct: 155 CDEQLIISLPFNQPVKVHSILIKGVSDRAPKKVKVFINLPKTTDFDNATALEPTQMLEFD 214
Query: 694 PSDLEGN--PVPLKFVKFQSVQ 753
S ++G+ V LK+VKFQ+VQ
Sbjct: 215 ESSIQGHGQVVALKYVKFQNVQ 236
Score = 64.1 bits (149), Expect = 1e-10
Identities = 29/79 (36%), Positives = 49/79 (62%)
Frame = +2
Query: 248 GRRAMPTFIFYRNRTKIDRLEGGNTTVLENKVRQYYGSDVAEEDEDNTVAGHMDLITFIT 427
G +MPTF+ +++ ++++++G + LE V++Y + A D+ VAG MDL +
Sbjct: 71 GVNSMPTFMVFQSGVRVEQMKGADAKALETMVKKYADNSAA----DSLVAGQMDLTPLVD 126
Query: 428 KSECECLNEADDHPLAQAL 484
K + ECLNE+DD PL + L
Sbjct: 127 KKQMECLNESDDTPLGRFL 145
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +3
Query: 195 AVFLKVDVDRCADTASAQGVVQCPHSFSTETG 290
AVFLKVDV+ C T+S GV P ++G
Sbjct: 53 AVFLKVDVEICEKTSSENGVNSMPTFMVFQSG 84
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 94 IQNDAHFQTEMANAGTKLVVVDFTA 168
+++D F+ +++ AG K V+VDFTA
Sbjct: 6 VKDDEDFRNQLSLAGLKSVIVDFTA 30
>AC024810-17|AAF60759.1| 284|Caenorhabditis elegans Hypothetical
protein Y54E10A.3 protein.
Length = 284
Score = 93.1 bits (221), Expect = 2e-19
Identities = 45/82 (54%), Positives = 58/82 (70%), Gaps = 2/82 (2%)
Frame = +1
Query: 514 CDEQLIINISFNQLVKLHSIKIKGPADKGPKSIKLFINQPRTLDFDQAAGYSSVQDLELT 693
CDEQLII++ FNQ VK+HSI IKG +D+ PK +K+FIN P+T DFD A Q LE
Sbjct: 155 CDEQLIISLPFNQPVKVHSILIKGVSDRAPKKVKVFINLPKTTDFDNATALEPTQMLEFD 214
Query: 694 PSDLEGN--PVPLKFVKFQSVQ 753
S ++G+ V LK+VKFQ+VQ
Sbjct: 215 ESSIQGHGQVVALKYVKFQNVQ 236
Score = 64.1 bits (149), Expect = 1e-10
Identities = 29/79 (36%), Positives = 49/79 (62%)
Frame = +2
Query: 248 GRRAMPTFIFYRNRTKIDRLEGGNTTVLENKVRQYYGSDVAEEDEDNTVAGHMDLITFIT 427
G +MPTF+ +++ ++++++G + LE V++Y + A D+ VAG MDL +
Sbjct: 71 GVNSMPTFMVFQSGVRVEQMKGADAKALETMVKKYADNSAA----DSLVAGQMDLTPLVD 126
Query: 428 KSECECLNEADDHPLAQAL 484
K + ECLNE+DD PL + L
Sbjct: 127 KKQMECLNESDDTPLGRFL 145
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +3
Query: 195 AVFLKVDVDRCADTASAQGVVQCPHSFSTETG 290
AVFLKVDV+ C T+S GV P ++G
Sbjct: 53 AVFLKVDVEICEKTSSENGVNSMPTFMVFQSG 84
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 94 IQNDAHFQTEMANAGTKLVVVDFTA 168
+++D F+ +++ AG K V+VDFTA
Sbjct: 6 VKDDEDFRNQLSLAGLKSVIVDFTA 30
>Z81552-7|CAB04487.2| 606|Caenorhabditis elegans Hypothetical
protein F56G4.5 protein.
Length = 606
Score = 42.7 bits (96), Expect = 3e-04
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +2
Query: 257 AMPTFIFYRNRTKIDRLEGGNTTVLENKVRQYY 355
AMPTFIF +NR ++D + G N + K+RQ+Y
Sbjct: 75 AMPTFIFLKNRQQVDMVRGANQQAIAEKIRQHY 107
>AL117201-5|CAB57916.1| 606|Caenorhabditis elegans Hypothetical
protein F56G4.5 protein.
Length = 606
Score = 42.7 bits (96), Expect = 3e-04
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +2
Query: 257 AMPTFIFYRNRTKIDRLEGGNTTVLENKVRQYY 355
AMPTFIF +NR ++D + G N + K+RQ+Y
Sbjct: 75 AMPTFIFLKNRQQVDMVRGANQQAIAEKIRQHY 107
>AF250925-1|AAF74721.1| 542|Caenorhabditis elegans PNGase protein.
Length = 542
Score = 42.7 bits (96), Expect = 3e-04
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +2
Query: 257 AMPTFIFYRNRTKIDRLEGGNTTVLENKVRQYY 355
AMPTFIF +NR ++D + G N + K+RQ+Y
Sbjct: 11 AMPTFIFLKNRQQVDMVRGANQQAIAEKIRQHY 43
>AC024827-2|AAF60805.2| 254|Caenorhabditis elegans Hypothetical
protein Y55F3AR.2 protein.
Length = 254
Score = 33.5 bits (73), Expect = 0.17
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3
Query: 174 LPAKFPRAVFLKVDVDRCADTASAQGVVQCPHSFSTETGPK 296
L ++ +VFLKVDVD C TA+ GV P + G K
Sbjct: 46 LANQYKGSVFLKVDVDECRGTAATYGVNAMPTFIAFVNGQK 86
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 248 GRRAMPTFIFYRNRTKIDRLEGGNTTVLENKVRQYYGSDVAEEDEDNTVAG 400
G AMPTFI + N K ++G + + L + V +Y + A ++G
Sbjct: 71 GVNAMPTFIAFVNGQKKATIQGADESGLRSMVAKYASTSAAWSGTGQRLSG 121
>AC006661-10|AAF39887.1| 843|Caenorhabditis elegans Hypothetical
protein H20J04.1 protein.
Length = 843
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 314 GNTTVLENKVRQYYGSDVAEEDEDNTVAGHMDLITFITKSEC 439
GN + L++ V++Y GSD ++V+G+ + + KS C
Sbjct: 436 GNLSSLKSAVKEYRGSDEFTNAASSSVSGYHSRVRSMDKSNC 477
>U23168-7|AAC38808.1| 115|Caenorhabditis elegans Hypothetical
protein B0228.5a protein.
Length = 115
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 254 RAMPTFIFYRNRTKIDRLEGGNTTVLENKVRQY 352
+ MPTFIF +N I+ LEG L KV ++
Sbjct: 79 KMMPTFIFTKNGDAIEALEGCVEDELRQKVLEH 111
>U23168-6|AAP86623.1| 114|Caenorhabditis elegans Hypothetical
protein B0228.5b protein.
Length = 114
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 254 RAMPTFIFYRNRTKIDRLEGGNTTVLENKVRQY 352
+ MPTFIF +N I+ LEG L KV ++
Sbjct: 78 KMMPTFIFTKNGDAIEALEGCVEDELRQKVLEH 110
>DQ241300-1|ABB45864.1| 114|Caenorhabditis elegans TRX-1b protein.
Length = 114
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 254 RAMPTFIFYRNRTKIDRLEGGNTTVLENKVRQY 352
+ MPTFIF +N I+ LEG L KV ++
Sbjct: 78 KMMPTFIFTKNGDAIEALEGCVEDELRQKVLEH 110
>DQ241299-1|ABB45863.1| 115|Caenorhabditis elegans TRX-1a protein.
Length = 115
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 254 RAMPTFIFYRNRTKIDRLEGGNTTVLENKVRQY 352
+ MPTFIF +N I+ LEG L KV ++
Sbjct: 79 KMMPTFIFTKNGDAIEALEGCVEDELRQKVLEH 111
>AL032654-10|CAB63391.1| 819|Caenorhabditis elegans Hypothetical
protein Y52B11A.10 protein.
Length = 819
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 314 GNTTVLENKVRQYYGSDVAEEDEDNTVAGHMDLITFITK 430
G V NK ++ YG D + DED T +M+ + TK
Sbjct: 105 GIVEVSVNKGKRKYGDDSEDSDEDLTYEQYMEEVQTATK 143
>AF125951-5|AAL27238.1| 345|Caenorhabditis elegans Hypothetical
protein D2063.3a protein.
Length = 345
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +2
Query: 257 AMPTFIFYRNRTKIDRLEGGNTTVLENKVRQYYGSDVAEEDED 385
A PT +F+ N ++DR++G +++KV +++ D
Sbjct: 73 AAPTLVFFSNGKEVDRIDGFVPKEIQSKVVLVASRSLSQSSSD 115
>AF125951-4|AAT68898.1| 342|Caenorhabditis elegans Hypothetical
protein D2063.3b protein.
Length = 342
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +2
Query: 257 AMPTFIFYRNRTKIDRLEGGNTTVLENKVRQYYGSDVAEEDED 385
A PT +F+ N ++DR++G +++KV +++ D
Sbjct: 73 AAPTLVFFSNGKEVDRIDGFVPKEIQSKVVLVASRSLSQSSSD 115
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,763,319
Number of Sequences: 27780
Number of extensions: 293871
Number of successful extensions: 740
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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