Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1476
(770 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04780.1 68416.m00515 expressed protein 83 1e-16
At4g04950.1 68417.m00719 thioredoxin family protein similar to P... 36 0.039
At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to te... 33 0.21
At1g19730.1 68414.m02465 thioredoxin H-type 4 (TRX-H-4) (GREN) i... 32 0.36
At4g32580.1 68417.m04638 thioredoxin family protein contains Pfa... 32 0.48
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa... 30 1.5
At3g08710.1 68416.m01012 thioredoxin family protein similar to t... 30 1.9
At1g11530.1 68414.m01324 thioredoxin family protein similar to t... 30 1.9
At1g59730.1 68414.m06725 thioredoxin, putative similar to SP|Q38... 29 3.4
At4g40020.1 68417.m05666 hypothetical protein 29 4.5
At3g11330.1 68416.m01378 leucine-rich repeat family protein 28 5.9
At5g39950.1 68418.m04844 thioredoxin H-type 2 (TRX-H-2) (Gif2) i... 28 7.9
At1g45145.1 68414.m05175 thioredoxin H-type 5 (TRX-H-5) (TOUL) i... 28 7.9
>At3g04780.1 68416.m00515 expressed protein
Length = 176
Score = 83.4 bits (197), Expect = 1e-16
Identities = 39/83 (46%), Positives = 56/83 (67%)
Frame = +1
Query: 517 DEQLIINISFNQLVKLHSIKIKGPADKGPKSIKLFINQPRTLDFDQAAGYSSVQDLELTP 696
DEQL+I I FNQ++KLHS IKGP ++GPK++K F N+ + F + ELT
Sbjct: 57 DEQLLIYIPFNQVIKLHSFAIKGPEEEGPKTVKFFSNKEH-MCFSNVNDFPPSDTAELTE 115
Query: 697 SDLEGNPVPLKFVKFQSVQTFTL 765
+L+G PV LK+VKFQ+V++ T+
Sbjct: 116 ENLKGKPVVLKYVKFQNVRSLTI 138
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 365 VAEEDEDNTVAGHMDLITFITKSECECLNEADDHPLAQAL 484
++ E G +DL+ FI S ECLN++ H L AL
Sbjct: 1 MSAESASQIPKGQVDLLDFIDWSGVECLNQSSSHSLPNAL 40
>At4g04950.1 68417.m00719 thioredoxin family protein similar to
PKCq-interacting protein PICOT from [Mus musculus]
GI:6840949, [Rattus norvegicus] GI:6840951; contains
Pfam profile PF00085: Thioredoxin
Length = 488
Score = 35.5 bits (78), Expect = 0.039
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 257 AMPTFIFYRNRTKIDRLEGGNTTVLENKVRQYYGSDVAEE 376
A+P F+F+++ +D LEG + + L NKV + GS + E
Sbjct: 74 AVPYFVFFKDGKTVDTLEGADPSSLANKVGKVAGSSTSAE 113
>At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to
tetratricoredoxin [Arabidopsis thaliana] GI:18041544;
similar to SP|Q42443 Thioredoxin H-type (TRX-H) (Phloem
sap 13 kDa protein-1) {Oryza sativa}; contains Pfam
profile: PF00085 Thioredoxin
Length = 380
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 159 LYSNLLPAKFPRAVFLKVDVDRCADTASAQGVVQCP 266
LYSNL + R VFLKVD+D+ D A++ + P
Sbjct: 313 LYSNLA-TQHSRVVFLKVDIDKANDVAASWNISSVP 347
>At1g19730.1 68414.m02465 thioredoxin H-type 4 (TRX-H-4) (GREN)
identical to SP|Q39239 Thioredoxin H-type 4 (TRX-H-4)
{Arabidopsis thaliana}
Length = 119
Score = 32.3 bits (70), Expect = 0.36
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 248 GRRAMPTFIFYRNRTKIDRLEGGNTTVLENKVRQYYGSDVA 370
G AMPTF+F + +D+L G N L+ K+ ++ G A
Sbjct: 79 GVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHTGVTTA 119
>At4g32580.1 68417.m04638 thioredoxin family protein contains Pfam
profile: PF00085 Thioredoxin
Length = 160
Score = 31.9 bits (69), Expect = 0.48
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 260 MPTFIFYRNRTKIDRLEGGNTTVLENKVRQYYGS 361
+P F+F+++ +D LEG + + L NKV + GS
Sbjct: 75 VPYFVFFKDGKTVDTLEGADPSSLANKVGKVAGS 108
>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
profiles PF00085: Thioredoxin, PF00515: TPR Domain;
similar to tetratricopeptide repeat protein 2
(GI:7248701) [Drosophila melanogaster]; similar to DnaJ
homolog subfamily C member 7 (Tetratricopeptide repeat
protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
[Homo sapiens]
Length = 699
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 138 NQVSRCGLYSNLLPAKFPRAVFLKVDVDRCADTASAQGVVQCP 266
+Q + + + L ++P FLKVD+D+C +A+ V P
Sbjct: 626 HQCKQISPFVDSLCTRYPSIHFLKVDIDKCPSIGNAENVRVVP 668
>At3g08710.1 68416.m01012 thioredoxin family protein similar to
thioredoxin H-type GB:P29448 SP|P29448 [Arabidopsis
thaliana], Thioredoxin H-type 2 (TRX-H2) SP|Q07090
{Nicotiana tabacum}; contains Pfam profile: PF00085
Thioredoxin
Length = 140
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 254 RAMPTFIFYRNRTKIDRLEGGNTTVLENKV 343
+A PTF F +N +I +L G N L+ KV
Sbjct: 97 KATPTFFFLKNGQQIGKLVGANKPELQKKV 126
>At1g11530.1 68414.m01324 thioredoxin family protein similar to
thioredoxin H-type from Arabidopsis thaliana SP|P29448,
Nicotiana tabacum SP|Q07090; contains Pfam profile:
PF00085 Thioredoxin
Length = 118
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 254 RAMPTFIFYRNRTKIDRLEGGNTTVLENKV 343
+AMPTF+F ++ +D+L G N ++ +V
Sbjct: 76 KAMPTFLFLKDGNAMDKLVGANPDEIKKRV 105
>At1g59730.1 68414.m06725 thioredoxin, putative similar to SP|Q38879
Thioredoxin H-type 2 (TRX-H-2) {Arabidopsis thaliana};
contains Pfam profile: PF00085 Thioredoxin
Length = 129
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 174 LPAKFPRAVFLKVDVDRCADTASAQGVVQCP 266
+ +K+ AVF +VDVDR D A + P
Sbjct: 68 IASKYSEAVFARVDVDRLMDVAGTYRAITLP 98
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 329 LENKVRQYYGS-DVAEEDEDNTVAGHMDLITFITKSECECLNEADDHPLAQA 481
L+ K+ Y S D +EEDED++ D+ + T+ E + A H AQA
Sbjct: 95 LKEKIDTSYNSQDSSEEDEDDSSVQDFDIESLKTEMESTKESLAQAHEAAQA 146
>At3g11330.1 68416.m01378 leucine-rich repeat family protein
Length = 499
Score = 28.3 bits (60), Expect = 5.9
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Frame = +1
Query: 478 STDK*QGIP--CCYCDEQLIINISFNQLVKLHSIKIKGPADKGPKSI---KLFINQPRTL 642
ST+K +P C C +I+++SFN+L L P + GP+ + KL + +
Sbjct: 275 STNKLTSLPDSICRCGSLVILDVSFNRLTYL-------PTNIGPELVNLEKLLVQYNKIR 327
Query: 643 DFDQAAG-YSSVQDLELTPSDLEGNP 717
F + G S++ L+ ++L G P
Sbjct: 328 SFPTSIGEMRSLKHLDAHFNELNGLP 353
>At5g39950.1 68418.m04844 thioredoxin H-type 2 (TRX-H-2) (Gif2)
identical to SP|Q38879 Thioredoxin H-type 2 (TRX-H-2)
{Arabidopsis thaliana}; identical to cDNA (Gif2) mRNA
for thioredoxin GI:992963
Length = 133
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 257 AMPTFIFYRNRTKIDRLEGGNTTVLENKV 343
AMPTF+ + +I+R+ G LE KV
Sbjct: 100 AMPTFVLVKRGKEIERIIGAKKDELEKKV 128
>At1g45145.1 68414.m05175 thioredoxin H-type 5 (TRX-H-5) (TOUL)
identical to SP|Q39241 Thioredoxin H-type 5 (TRX-H-5)
{Arabidopsis thaliana}; identical to cDNA (TOUL) mRNA
for thioredoxin GI:992965
Length = 118
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 257 AMPTFIFYRNRTKIDRLEGGNTTVLENKVRQYYG 358
AMPTF+F + IDR+ G + K+ ++ G
Sbjct: 80 AMPTFVFMKEGNIIDRVVGAAKDEINEKLMKHGG 113
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,657,001
Number of Sequences: 28952
Number of extensions: 265545
Number of successful extensions: 644
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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