Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1475
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex s...    63   5e-11
SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4 |Schiz...    27   3.2  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    27   4.3  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   5.6  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    25   9.8  

>SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex
           subunit Arc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 62.9 bits (146), Expect = 5e-11
 Identities = 29/83 (34%), Positives = 47/83 (56%)
 Frame = +2

Query: 260 VLNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSLSLDDIDNLMKYIYKGFEFP 439
           +L+  P G+  Q+V+   L   + VL  I++A I   V   S ++IDN++ +IY+G   P
Sbjct: 59  LLSYVPYGNDVQEVRTQYLNAFVDVLSNIRAADIPAFVKECSTEEIDNIVNFIYRGLANP 118

Query: 440 SEGSSGHLLLWHDKAYSVGGLGC 508
              +S  LL WH+K   + G+GC
Sbjct: 119 QAYNSSVLLNWHEKVVEISGIGC 141


>SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 314 LTLTLKVLLAIKSAQIEEAVGSLSLDDIDNLMKYIYKGFEFP 439
           LTL   V   +  ++  +  G L++ D  N++KY Y+   FP
Sbjct: 50  LTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFP 91


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +2

Query: 359 IEEAVGSLSLDDIDNLMKYIYKGFE 433
           + + +G L +DD+++L+ Y+Y   E
Sbjct: 756 VGQTLGELGVDDVNDLISYVYHDVE 780


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +2

Query: 536 ECNYYKY--YTAQPINETFILNFKECWFNFFICLQNDSWFSASKFYLLLNCVVKWLIKFI 709
           +C+Y K   + + P+   +    K C+FNF I L+  S   +  F  L + +V+ L  F 
Sbjct: 232 QCSYLKKSNFPSPPLFTAWTW-IKPCFFNFVILLKRISIGDSQLFLHLHSRIVQTLCCFS 290

Query: 710 *HLKYH 727
            +  YH
Sbjct: 291 LNFIYH 296


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 599 KECWF-NFFICLQNDSWFSASKFYLLLNCVVKWLIKFI*HLKYHPCSLKW 745
           K CW  N +     D+  S S+  L+ N   K  I+ + ++ Y P  L+W
Sbjct: 515 KHCWEGNDYAIRDFDTPISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,129,772
Number of Sequences: 5004
Number of extensions: 60788
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)