Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1475
         (822 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0084 + 19899972-19900075,19900187-19900259,19900343-199004...    39   0.006
02_02_0333 + 9042393-9043610                                           31   1.5  
09_04_0435 - 17545879-17546605,17546721-17546782,17547123-175473...    29   5.9  

>11_06_0084 +
           19899972-19900075,19900187-19900259,19900343-19900443,
           19901502-19901637
          Length = 137

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 22/82 (26%), Positives = 38/82 (46%)
 Frame = +2

Query: 263 LNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSLSLDDIDNLMKYIYKGFEFPS 442
           L   PL + +++ K     +  + ++AI+   ++    SL  +  D LMKY+Y+G     
Sbjct: 46  LEGTPLKTRDERCKSANWIVVHRAMMAIRD--VDGMFNSLDPEYYDILMKYLYRGLSTGD 103

Query: 443 EGSSGHLLLWHDKAYSVGGLGC 508
             +    L  H+K     GLGC
Sbjct: 104 RPTCDQCLKIHEKLTEKAGLGC 125


>02_02_0333 + 9042393-9043610
          Length = 405

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 542 YTLILSERTLANNQDHLHCMLYHAITT 462
           Y L+ S   L NN +H HC+L + ++T
Sbjct: 241 YYLVYSTGVLVNNNEHRHCLLMYDLST 267


>09_04_0435 -
           17545879-17546605,17546721-17546782,17547123-17547335,
           17547506-17547590,17547904-17548061,17548174-17548294,
           17548765-17548927,17548973-17549097,17550800-17550888,
           17550970-17551636,17552671-17552717,17553506-17553862
          Length = 937

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +3

Query: 135 IDQYNEDNFKEDEAEQAGPTGPDEGEVCSLL--NQGRHIDA 251
           +DQ  E         QAG  G DEG+V      NQG+H D+
Sbjct: 848 VDQAAEVEMLHQHQHQAGRGGWDEGDVMPFFYSNQGKHHDS 888


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,615,919
Number of Sequences: 37544
Number of extensions: 335732
Number of successful extensions: 594
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)