Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1475
(822 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC002418-1|AAH02418.1| 153|Homo sapiens actin related protein 2... 97 7e-20
BC000798-1|AAH00798.1| 153|Homo sapiens actin related protein 2... 97 7e-20
BC000018-1|AAH00018.1| 153|Homo sapiens actin related protein 2... 97 7e-20
AL354928-9|CAI39641.1| 153|Homo sapiens actin related protein 2... 97 7e-20
AF087842-1|AAP97155.1| 152|Homo sapiens ARC16-2 protein. 97 7e-20
BC057237-1|AAH57237.1| 154|Homo sapiens ARPC5 protein protein. 93 1e-18
AL137800-9|CAI19482.1| 154|Homo sapiens actin related protein 2... 93 1e-18
AL137800-8|CAC19687.1| 151|Homo sapiens actin related protein 2... 93 1e-18
AF017807-1|AAB70561.1| 151|Homo sapiens Arp2/3 complex 16kDa su... 93 1e-18
AF006088-1|AAB64193.1| 151|Homo sapiens p16-Arc protein. 93 1e-18
AL137800-7|CAI19481.1| 135|Homo sapiens actin related protein 2... 83 9e-16
BC071857-1|AAH71857.1| 88|Homo sapiens Unknown (protein for MG... 57 7e-08
>BC002418-1|AAH02418.1| 153|Homo sapiens actin related protein 2/3
complex, subunit 5-like protein.
Length = 153
Score = 97.1 bits (231), Expect = 7e-20
Identities = 47/81 (58%), Positives = 59/81 (72%)
Frame = +2
Query: 263 LNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSLSLDDIDNLMKYIYKGFEFPS 442
L N+P+ + NQ VKE A + LKVL KS++IE+AV SL + +D LMKYIYKGFE P+
Sbjct: 61 LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGVDLLMKYIYKGFEKPT 120
Query: 443 EGSSGHLLLWHDKAYSVGGLG 505
E SS LL WH+KA +VGGLG
Sbjct: 121 ENSSAVLLQWHEKALAVGGLG 141
Score = 53.2 bits (122), Expect = 1e-06
Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Frame = +3
Query: 93 MAKNTLSSAFRKIDIDQYNEDNF---KEDEAEQAGPTGPDEGEVCSLLNQG 236
MA+NTLSS FR++DID+++E+ F +E+ A A GPD EV LL QG
Sbjct: 1 MARNTLSSRFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQG 51
>BC000798-1|AAH00798.1| 153|Homo sapiens actin related protein 2/3
complex, subunit 5-like protein.
Length = 153
Score = 97.1 bits (231), Expect = 7e-20
Identities = 47/81 (58%), Positives = 59/81 (72%)
Frame = +2
Query: 263 LNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSLSLDDIDNLMKYIYKGFEFPS 442
L N+P+ + NQ VKE A + LKVL KS++IE+AV SL + +D LMKYIYKGFE P+
Sbjct: 61 LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGVDLLMKYIYKGFEKPT 120
Query: 443 EGSSGHLLLWHDKAYSVGGLG 505
E SS LL WH+KA +VGGLG
Sbjct: 121 ENSSAVLLQWHEKALAVGGLG 141
Score = 53.2 bits (122), Expect = 1e-06
Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Frame = +3
Query: 93 MAKNTLSSAFRKIDIDQYNEDNF---KEDEAEQAGPTGPDEGEVCSLLNQG 236
MA+NTLSS FR++DID+++E+ F +E+ A A GPD EV LL QG
Sbjct: 1 MARNTLSSRFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQG 51
>BC000018-1|AAH00018.1| 153|Homo sapiens actin related protein 2/3
complex, subunit 5-like protein.
Length = 153
Score = 97.1 bits (231), Expect = 7e-20
Identities = 47/81 (58%), Positives = 59/81 (72%)
Frame = +2
Query: 263 LNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSLSLDDIDNLMKYIYKGFEFPS 442
L N+P+ + NQ VKE A + LKVL KS++IE+AV SL + +D LMKYIYKGFE P+
Sbjct: 61 LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGVDLLMKYIYKGFEKPT 120
Query: 443 EGSSGHLLLWHDKAYSVGGLG 505
E SS LL WH+KA +VGGLG
Sbjct: 121 ENSSAVLLQWHEKALAVGGLG 141
Score = 53.2 bits (122), Expect = 1e-06
Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Frame = +3
Query: 93 MAKNTLSSAFRKIDIDQYNEDNF---KEDEAEQAGPTGPDEGEVCSLLNQG 236
MA+NTLSS FR++DID+++E+ F +E+ A A GPD EV LL QG
Sbjct: 1 MARNTLSSRFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQG 51
>AL354928-9|CAI39641.1| 153|Homo sapiens actin related protein 2/3
complex, subunit 5-like protein.
Length = 153
Score = 97.1 bits (231), Expect = 7e-20
Identities = 47/81 (58%), Positives = 59/81 (72%)
Frame = +2
Query: 263 LNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSLSLDDIDNLMKYIYKGFEFPS 442
L N+P+ + NQ VKE A + LKVL KS++IE+AV SL + +D LMKYIYKGFE P+
Sbjct: 61 LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGVDLLMKYIYKGFEKPT 120
Query: 443 EGSSGHLLLWHDKAYSVGGLG 505
E SS LL WH+KA +VGGLG
Sbjct: 121 ENSSAVLLQWHEKALAVGGLG 141
Score = 53.2 bits (122), Expect = 1e-06
Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Frame = +3
Query: 93 MAKNTLSSAFRKIDIDQYNEDNF---KEDEAEQAGPTGPDEGEVCSLLNQG 236
MA+NTLSS FR++DID+++E+ F +E+ A A GPD EV LL QG
Sbjct: 1 MARNTLSSRFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQG 51
>AF087842-1|AAP97155.1| 152|Homo sapiens ARC16-2 protein.
Length = 152
Score = 97.1 bits (231), Expect = 7e-20
Identities = 47/81 (58%), Positives = 59/81 (72%)
Frame = +2
Query: 263 LNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSLSLDDIDNLMKYIYKGFEFPS 442
L N+P+ + NQ VKE A + LKVL KS++IE+AV SL + +D LMKYIYKGFE P+
Sbjct: 60 LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGVDLLMKYIYKGFEKPT 119
Query: 443 EGSSGHLLLWHDKAYSVGGLG 505
E SS LL WH+KA +VGGLG
Sbjct: 120 ENSSAVLLQWHEKALAVGGLG 140
Score = 57.2 bits (132), Expect = 7e-08
Identities = 27/50 (54%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Frame = +3
Query: 93 MAKNTLSSAFRKIDIDQYNEDNF--KEDEAEQAGPTGPDEGEVCSLLNQG 236
MA+NTLSS FR++DID+++E+ F +++EA A TGPD EV LL QG
Sbjct: 1 MARNTLSSRFRRVDIDEFDENKFVDEQEEAAAAARTGPDPSEVDGLLRQG 50
>BC057237-1|AAH57237.1| 154|Homo sapiens ARPC5 protein protein.
Length = 154
Score = 92.7 bits (220), Expect = 1e-18
Identities = 43/84 (51%), Positives = 59/84 (70%)
Frame = +2
Query: 254 QLVLNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSLSLDDIDNLMKYIYKGFE 433
Q L N P+ + +Q VK+ A ++ LKVL++ K+ IE+AV SL + +D LMKYIYKGFE
Sbjct: 59 QAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFE 118
Query: 434 FPSEGSSGHLLLWHDKAYSVGGLG 505
PS+ SS LL WH+KA + GG+G
Sbjct: 119 SPSDNSSAMLLQWHEKALAAGGVG 142
Score = 55.2 bits (127), Expect = 3e-07
Identities = 26/46 (56%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Frame = +3
Query: 93 MAKNTLSSA-FRKIDIDQYNEDNFKEDEAEQAGPTGPDEGEVCSLL 227
M+KNT+SSA FRK+D+D+Y+E+ F ++E G GPDEGEV S L
Sbjct: 1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCL 46
>AL137800-9|CAI19482.1| 154|Homo sapiens actin related protein 2/3
complex, subunit 5, 16kDa protein.
Length = 154
Score = 92.7 bits (220), Expect = 1e-18
Identities = 43/84 (51%), Positives = 59/84 (70%)
Frame = +2
Query: 254 QLVLNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSLSLDDIDNLMKYIYKGFE 433
Q L N P+ + +Q VK+ A ++ LKVL++ K+ IE+AV SL + +D LMKYIYKGFE
Sbjct: 59 QAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFE 118
Query: 434 FPSEGSSGHLLLWHDKAYSVGGLG 505
PS+ SS LL WH+KA + GG+G
Sbjct: 119 SPSDNSSAMLLQWHEKALAAGGVG 142
Score = 55.2 bits (127), Expect = 3e-07
Identities = 26/46 (56%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Frame = +3
Query: 93 MAKNTLSSA-FRKIDIDQYNEDNFKEDEAEQAGPTGPDEGEVCSLL 227
M+KNT+SSA FRK+D+D+Y+E+ F ++E G GPDEGEV S L
Sbjct: 1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCL 46
>AL137800-8|CAC19687.1| 151|Homo sapiens actin related protein 2/3
complex, subunit 5, 16kDa protein.
Length = 151
Score = 92.7 bits (220), Expect = 1e-18
Identities = 43/84 (51%), Positives = 59/84 (70%)
Frame = +2
Query: 254 QLVLNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSLSLDDIDNLMKYIYKGFE 433
Q L N P+ + +Q VK+ A ++ LKVL++ K+ IE+AV SL + +D LMKYIYKGFE
Sbjct: 56 QAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFE 115
Query: 434 FPSEGSSGHLLLWHDKAYSVGGLG 505
PS+ SS LL WH+KA + GG+G
Sbjct: 116 SPSDNSSAMLLQWHEKALAAGGVG 139
Score = 60.9 bits (141), Expect = 5e-09
Identities = 30/55 (54%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Frame = +3
Query: 93 MAKNTLSSA-FRKIDIDQYNEDNFKEDEAEQAGPTGPDEGEVCSLLNQGRHIDAL 254
M+KNT+SSA FRK+D+D+Y+E+ F ++E G GPDEGEV S L QG AL
Sbjct: 1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAAL 55
>AF017807-1|AAB70561.1| 151|Homo sapiens Arp2/3 complex 16kDa
subunit protein.
Length = 151
Score = 92.7 bits (220), Expect = 1e-18
Identities = 43/84 (51%), Positives = 59/84 (70%)
Frame = +2
Query: 254 QLVLNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSLSLDDIDNLMKYIYKGFE 433
Q L N P+ + +Q VK+ A ++ LKVL++ K+ IE+AV SL + +D LMKYIYKGFE
Sbjct: 56 QAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFE 115
Query: 434 FPSEGSSGHLLLWHDKAYSVGGLG 505
PS+ SS LL WH+KA + GG+G
Sbjct: 116 SPSDNSSAMLLQWHEKALAAGGVG 139
Score = 60.9 bits (141), Expect = 5e-09
Identities = 30/55 (54%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Frame = +3
Query: 93 MAKNTLSSA-FRKIDIDQYNEDNFKEDEAEQAGPTGPDEGEVCSLLNQGRHIDAL 254
M+KNT+SSA FRK+D+D+Y+E+ F ++E G GPDEGEV S L QG AL
Sbjct: 1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAAL 55
>AF006088-1|AAB64193.1| 151|Homo sapiens p16-Arc protein.
Length = 151
Score = 92.7 bits (220), Expect = 1e-18
Identities = 43/84 (51%), Positives = 59/84 (70%)
Frame = +2
Query: 254 QLVLNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSLSLDDIDNLMKYIYKGFE 433
Q L N P+ + +Q VK+ A ++ LKVL++ K+ IE+AV SL + +D LMKYIYKGFE
Sbjct: 56 QAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFE 115
Query: 434 FPSEGSSGHLLLWHDKAYSVGGLG 505
PS+ SS LL WH+KA + GG+G
Sbjct: 116 SPSDNSSAMLLQWHEKALAAGGVG 139
Score = 60.9 bits (141), Expect = 5e-09
Identities = 30/55 (54%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Frame = +3
Query: 93 MAKNTLSSA-FRKIDIDQYNEDNFKEDEAEQAGPTGPDEGEVCSLLNQGRHIDAL 254
M+KNT+SSA FRK+D+D+Y+E+ F ++E G GPDEGEV S L QG AL
Sbjct: 1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAAL 55
>AL137800-7|CAI19481.1| 135|Homo sapiens actin related protein 2/3
complex, subunit 5, 16kDa protein.
Length = 135
Score = 83.4 bits (197), Expect = 9e-16
Identities = 39/76 (51%), Positives = 53/76 (69%)
Frame = +2
Query: 254 QLVLNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSLSLDDIDNLMKYIYKGFE 433
Q L N P+ + +Q VK+ A ++ LKVL++ K+ IE+AV SL + +D LMKYIYKGFE
Sbjct: 56 QAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFE 115
Query: 434 FPSEGSSGHLLLWHDK 481
PS+ SS LL WH+K
Sbjct: 116 SPSDNSSAMLLQWHEK 131
Score = 60.9 bits (141), Expect = 5e-09
Identities = 30/55 (54%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Frame = +3
Query: 93 MAKNTLSSA-FRKIDIDQYNEDNFKEDEAEQAGPTGPDEGEVCSLLNQGRHIDAL 254
M+KNT+SSA FRK+D+D+Y+E+ F ++E G GPDEGEV S L QG AL
Sbjct: 1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAAL 55
>BC071857-1|AAH71857.1| 88|Homo sapiens Unknown (protein for
MGC:88523) protein.
Length = 88
Score = 57.2 bits (132), Expect = 7e-08
Identities = 27/48 (56%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Frame = +3
Query: 93 MAKNTLSSA-FRKIDIDQYNEDNFKEDEAEQAGPTGPDEGEVCSLLNQ 233
M+KNT+SSA FRK+D+D+Y+E+ F ++E G GPDEGEV S L Q
Sbjct: 1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQ 48
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,888,833
Number of Sequences: 237096
Number of extensions: 1976994
Number of successful extensions: 3245
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3245
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10259383312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -