Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1475
         (822 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089678-1|AAL90416.1|  151|Drosophila melanogaster RH48239p pro...   114   1e-25
AE014134-433|AAF51237.1|  151|Drosophila melanogaster CG9881-PA ...   114   1e-25
X03121-2|CAA26897.1|  530|Drosophila melanogaster alpha protein ...    29   5.8  
AY071374-1|AAL48996.1|  530|Drosophila melanogaster RE40347p pro...    29   5.8  
AE014297-4523|AAF56999.1|  530|Drosophila melanogaster CG17957-P...    29   5.8  

>AY089678-1|AAL90416.1|  151|Drosophila melanogaster RH48239p
           protein.
          Length = 151

 Score =  114 bits (275), Expect = 1e-25
 Identities = 52/83 (62%), Positives = 68/83 (81%), Gaps = 1/83 (1%)
 Frame = +2

Query: 263 LNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSLSLDD-IDNLMKYIYKGFEFP 439
           L NAPL   NQ VK++AL +TL+VLL+IKS Q+++A+ +L  +D ID LMKYIY+GFE P
Sbjct: 58  LQNAPLRCKNQNVKDHALNITLRVLLSIKSTQMDQAIDTLDQNDLIDVLMKYIYRGFEIP 117

Query: 440 SEGSSGHLLLWHDKAYSVGGLGC 508
           SEGSSGHLL WH+KA++ GG+GC
Sbjct: 118 SEGSSGHLLQWHEKAFAKGGVGC 140



 Score = 79.8 bits (188), Expect = 4e-15
 Identities = 33/54 (61%), Positives = 44/54 (81%)
 Frame = +3

Query: 93  MAKNTLSSAFRKIDIDQYNEDNFKEDEAEQAGPTGPDEGEVCSLLNQGRHIDAL 254
           MAKNT S+AFRKID+DQYNEDNF+ED+  ++   GPDE E+ +LL QG+ ++AL
Sbjct: 1   MAKNTSSNAFRKIDVDQYNEDNFREDDGVESAAAGPDESEITTLLTQGKSVEAL 54


>AE014134-433|AAF51237.1|  151|Drosophila melanogaster CG9881-PA
           protein.
          Length = 151

 Score =  114 bits (275), Expect = 1e-25
 Identities = 52/83 (62%), Positives = 68/83 (81%), Gaps = 1/83 (1%)
 Frame = +2

Query: 263 LNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSLSLDD-IDNLMKYIYKGFEFP 439
           L NAPL   NQ VK++AL +TL+VLL+IKS Q+++A+ +L  +D ID LMKYIY+GFE P
Sbjct: 58  LQNAPLRCKNQNVKDHALNITLRVLLSIKSTQMDQAIDTLDQNDLIDVLMKYIYRGFEIP 117

Query: 440 SEGSSGHLLLWHDKAYSVGGLGC 508
           SEGSSGHLL WH+KA++ GG+GC
Sbjct: 118 SEGSSGHLLQWHEKAFAKGGVGC 140



 Score = 79.8 bits (188), Expect = 4e-15
 Identities = 33/54 (61%), Positives = 44/54 (81%)
 Frame = +3

Query: 93  MAKNTLSSAFRKIDIDQYNEDNFKEDEAEQAGPTGPDEGEVCSLLNQGRHIDAL 254
           MAKNT S+AFRKID+DQYNEDNF+ED+  ++   GPDE E+ +LL QG+ ++AL
Sbjct: 1   MAKNTSSNAFRKIDVDQYNEDNFREDDGVESAAAGPDESEITTLLTQGKSVEAL 54


>X03121-2|CAA26897.1|  530|Drosophila melanogaster alpha protein
           protein.
          Length = 530

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 578 H*LVEPCSIYNNYTLILSERTLANNQDHL 492
           H +++ CS+ NNY  +L ER    ++ HL
Sbjct: 351 HEIIDSCSLINNYLDMLGERIHVQDKSHL 379


>AY071374-1|AAL48996.1|  530|Drosophila melanogaster RE40347p
           protein.
          Length = 530

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 578 H*LVEPCSIYNNYTLILSERTLANNQDHL 492
           H +++ CS+ NNY  +L ER    ++ HL
Sbjct: 351 HEIIDSCSLINNYLDMLGERIHVQDKSHL 379


>AE014297-4523|AAF56999.1|  530|Drosophila melanogaster CG17957-PA
           protein.
          Length = 530

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 578 H*LVEPCSIYNNYTLILSERTLANNQDHL 492
           H +++ CS+ NNY  +L ER    ++ HL
Sbjct: 351 HEIIDSCSLINNYLDMLGERIHVQDKSHL 379


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,535,514
Number of Sequences: 53049
Number of extensions: 620449
Number of successful extensions: 1264
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3880595628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)