Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1475
(822 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88314-5|AAF99882.1| 146|Caenorhabditis elegans Hypothetical pr... 65 7e-11
AF067624-1|AAC17561.1| 152|Caenorhabditis elegans Arp2/3 comple... 60 2e-09
U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p... 29 3.0
Z73911-2|CAC42338.2| 402|Caenorhabditis elegans Hypothetical pr... 29 5.3
U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast... 28 7.0
U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast... 28 7.0
U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast... 28 7.0
Z68880-9|CAA93099.1| 255|Caenorhabditis elegans Hypothetical pr... 28 9.3
Z68879-12|CAA93091.1| 255|Caenorhabditis elegans Hypothetical p... 28 9.3
>U88314-5|AAF99882.1| 146|Caenorhabditis elegans Hypothetical
protein C46H11.3 protein.
Length = 146
Score = 64.9 bits (151), Expect = 7e-11
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = +2
Query: 254 QLVLNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSLSLDDIDNLMKYIYKGFE 433
Q VL N P G S Q++K A+ L +V+ A + IEE+V LS ++ D LMKYIYK +
Sbjct: 50 QSVLLNPPFGHSEQELKNRAVLLVAEVIHAFRQTDIEESVHKLSNENGDILMKYIYKAMQ 109
Query: 434 FPSEGSSG-HLLLWHDKAYSVGGLG 505
S+ ++ LLLWH + S G G
Sbjct: 110 LCSDSATCLSLLLWHSQLVSKFGQG 134
>AF067624-1|AAC17561.1| 152|Caenorhabditis elegans Arp2/3 complex
component protein 7 protein.
Length = 152
Score = 60.1 bits (139), Expect = 2e-09
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Frame = +2
Query: 263 LNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSLSLDDIDNLMKYIYKGFEFPS 442
L + PL + +Q VK+ A L KVL + K+A+IE V LS+++ D LMKY+YK E +
Sbjct: 59 LLSPPLKTKDQNVKDRATQLVTKVLQSFKNAEIEATVQKLSIEESDILMKYVYKSMEIGA 118
Query: 443 EGS-SGHLLLWHDKAYSVGGLGC*QEFF 523
+ + LL WH + + G G F
Sbjct: 119 DAAVCQSLLAWHAQLVAKFGHGAIMRVF 146
Score = 41.1 bits (92), Expect = 0.001
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +3
Query: 93 MAKNTLSSAFRKIDIDQYNEDNFKE-DEAEQAGPTGPDEGEVCSLLNQGRHIDAL 254
M+KN ++++RK+D+D ++ + + E DE GPDE V L+ R DAL
Sbjct: 1 MSKNMQNTSYRKLDVDSFDPEQYDENDETVDTPGLGPDERAVQGFLSSNRLEDAL 55
>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
protein C56C10.12 protein.
Length = 1599
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 711 YINFINHLTTQLSNK*NLDALNHESFCKQIKKLNQ 607
+IN I L+ Q + + +++ +S+CKQIK L Q
Sbjct: 1370 FINTIKQLSKQFAQSGDRMSMDDDSYCKQIKALYQ 1404
>Z73911-2|CAC42338.2| 402|Caenorhabditis elegans Hypothetical
protein T12A7.6 protein.
Length = 402
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 387 KDKLPTASSICADLIASNTFKVRV 316
KDK+PT S IC+ I ++ F+ R+
Sbjct: 28 KDKVPTLSEICSSSITTSLFQNRI 51
>U39848-6|AAL11100.1| 317|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform c protein.
Length = 317
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 410 KYIYKGFEFPSEGSSGHLLLWHDKAYSVGGLG 505
KY ++G +FPS +G +L H+ GG G
Sbjct: 241 KYFFQGPQFPSGPETGLMLQMHNLTLGTGGGG 272
>U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform b protein.
Length = 367
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 410 KYIYKGFEFPSEGSSGHLLLWHDKAYSVGGLG 505
KY ++G +FPS +G +L H+ GG G
Sbjct: 291 KYFFQGPQFPSGPETGLMLQMHNLTLGTGGGG 322
>U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform a protein.
Length = 444
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 410 KYIYKGFEFPSEGSSGHLLLWHDKAYSVGGLG 505
KY ++G +FPS +G +L H+ GG G
Sbjct: 368 KYFFQGPQFPSGPETGLMLQMHNLTLGTGGGG 399
>Z68880-9|CAA93099.1| 255|Caenorhabditis elegans Hypothetical
protein K08F4.9 protein.
Length = 255
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 159 SCLHCIDLCLFSGMLSLKYFLP 94
S LHCID+ S +L+ ++FLP
Sbjct: 107 SVLHCIDVNAVSALLASQHFLP 128
>Z68879-12|CAA93091.1| 255|Caenorhabditis elegans Hypothetical
protein K08F4.9 protein.
Length = 255
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 159 SCLHCIDLCLFSGMLSLKYFLP 94
S LHCID+ S +L+ ++FLP
Sbjct: 107 SVLHCIDVNAVSALLASQHFLP 128
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,115,044
Number of Sequences: 27780
Number of extensions: 334408
Number of successful extensions: 713
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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