Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1475
         (822 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01710.1 68417.m00222 actin polymerization factor protein-rel...    40   0.003
At5g47500.1 68418.m05865 pectinesterase family protein contains ...    29   3.7  

>At4g01710.1 68417.m00222 actin polymerization factor
           protein-related similar to human ARP2/3 complex 16 kd
           subunit, GenBank accession number O15511 likely
           functions to control the polymerization of actin
          Length = 132

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 23/82 (28%), Positives = 40/82 (48%)
 Frame = +2

Query: 263 LNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSLSLDDIDNLMKYIYKGFEFPS 442
           L  +P  + +++ K     +  + L+AIK   I+  + +L ++  D LMKY+Y+G     
Sbjct: 41  LEGSPPKTRDERCKSANWIVVHRALMAIKD--IDGMLNALDVEYYDILMKYLYRGLSTGD 98

Query: 443 EGSSGHLLLWHDKAYSVGGLGC 508
             +    L  H+K     GLGC
Sbjct: 99  RPTCDQCLKIHEKLTERAGLGC 120


>At5g47500.1 68418.m05865 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 362

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 434 FPSEGSSGHLLLWHDKAYSVGGLGC*QEFFQTE*ECNYYKYYTAQPINET 583
           F   G     + WHD+A  +G  G     +QT     Y  Y+TA+ I+ T
Sbjct: 113 FKGAGRDVTAIEWHDRASDLGANGQQLRTYQTASVTVYANYFTARNISFT 162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,729,433
Number of Sequences: 28952
Number of extensions: 295060
Number of successful extensions: 562
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)