Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1474
         (784 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6SJ93 Cluster: Putative uncharacterized protein; n=1; ...    37   0.65 
UniRef50_Q2W0U7 Cluster: Sensor protein; n=3; Magnetospirillum|R...    33   8.1  

>UniRef50_A6SJ93 Cluster: Putative uncharacterized protein; n=1;
            Botryotinia fuckeliana B05.10|Rep: Putative
            uncharacterized protein - Botryotinia fuckeliana B05.10
          Length = 1521

 Score = 36.7 bits (81), Expect = 0.65
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 409  QNDERLLDCFPATRVAGSEPGCVCRCVSLLYGSQVLSGSPSQSTSLPAAST 257
            +ND+R +D  P+  +  ++P C  RC    +G     G   +S S P A+T
Sbjct: 963  ENDDRTVDYDPSKHILSTDPHCAARC---FHGEAAAEGKVEESDSKPGAAT 1010


>UniRef50_Q2W0U7 Cluster: Sensor protein; n=3; Magnetospirillum|Rep:
           Sensor protein - Magnetospirillum magneticum (strain
           AMB-1 / ATCC 700264)
          Length = 1012

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 765 CPGMQMLHEPHSRHSPKGGLWSRDTGRVAPLLDTSPPVDN 646
           CP  Q LH+ + RH P+   W RD   V     T+P + N
Sbjct: 425 CPVWQTLHDGNIRHVPRDVHWRRDGTPVTVEFTTAPIIQN 464


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 843,748,061
Number of Sequences: 1657284
Number of extensions: 17872598
Number of successful extensions: 37918
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 35952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37909
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66262109095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)