Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1474
         (784 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    25   0.90 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.8  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    23   3.6  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   4.8  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   4.8  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   4.8  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   4.8  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   4.8  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   4.8  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   4.8  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    22   4.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.8  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   4.8  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 711 GLWSRDTGRVAPLLDTSPPVDNREQE 634
           G W R+TG  APL   SP  D++ Q+
Sbjct: 283 GKWERETGHNAPLY--SPSSDSQYQK 306


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 711  GLWSRDTGRVAPL 673
            G W + TG VAPL
Sbjct: 1594 GQWDKQTGHVAPL 1606



 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 711  GLWSRDTGRVAPL 673
            G W + TG VAPL
Sbjct: 2517 GHWDKQTGHVAPL 2529


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 693 TGRVAPLLDTSPPVDNREQETR*GGSQAPPLT 598
           TG  APL   S  VD+  Q    GG+ A  +T
Sbjct: 212 TGLNAPLYGNSMSVDSSVQSWLSGGASASKVT 243


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +2

Query: 587 SPRAVSGGA*DPPHRVSCSRLSTGGDVSRSGATRPVSLDHRPP 715
           SP+ +S     P      S  S       SG T P+S+   PP
Sbjct: 112 SPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPP 154


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +2

Query: 587 SPRAVSGGA*DPPHRVSCSRLSTGGDVSRSGATRPVSLDHRPP 715
           SP+ +S     P      S  S       SG T P+S+   PP
Sbjct: 112 SPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPP 154


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +2

Query: 587 SPRAVSGGA*DPPHRVSCSRLSTGGDVSRSGATRPVSLDHRPP 715
           SP+ +S     P      S  S       SG T P+S+   PP
Sbjct: 112 SPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPP 154


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +2

Query: 587 SPRAVSGGA*DPPHRVSCSRLSTGGDVSRSGATRPVSLDHRPP 715
           SP+ +S     P      S  S       SG T P+S+   PP
Sbjct: 112 SPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPP 154


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +2

Query: 587 SPRAVSGGA*DPPHRVSCSRLSTGGDVSRSGATRPVSLDHRPP 715
           SP+ +S     P      S  S       SG T P+S+   PP
Sbjct: 112 SPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPP 154


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +2

Query: 587 SPRAVSGGA*DPPHRVSCSRLSTGGDVSRSGATRPVSLDHRPP 715
           SP+ +S     P      S  S       SG T P+S+   PP
Sbjct: 68  SPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPP 110


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +2

Query: 587 SPRAVSGGA*DPPHRVSCSRLSTGGDVSRSGATRPVSLDHRPP 715
           SP+ +S     P      S  S       SG T P+S+   PP
Sbjct: 112 SPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPP 154


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +2

Query: 587 SPRAVSGGA*DPPHRVSCSRLSTGGDVSRSGATRPVSLDHRPP 715
           SP+ +S     P      S  S       SG T P+S+   PP
Sbjct: 112 SPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPP 154


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +3

Query: 297 PEST*LPYNKETHLHTQPGSDPATLVAGKQSSNRSSFCEPLVIPS 431
           P+S   P +            PAT  +G  +S  S+   PL IP+
Sbjct: 15  PQSAATPISSSGMTSPAAAPPPATTSSGSPASVASNASAPLHIPA 59


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +2

Query: 587 SPRAVSGGA*DPPHRVSCSRLSTGGDVSRSGATRPVSLDHRPP 715
           SP+ +S     P      S  S       SG T P+S+   PP
Sbjct: 112 SPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPP 154


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,312
Number of Sequences: 336
Number of extensions: 4807
Number of successful extensions: 20
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)