Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1474
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    29   0.99 
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    28   1.7  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    27   2.3  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    27   4.0  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    26   5.3  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   9.3  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   9.3  
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    25   9.3  

>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 47  QFIGSLVYFYSTRVSVS*FILHTVSTTIY 133
           Q +G LVYF    + +S  +LH V T IY
Sbjct: 340 QLVGGLVYFLYPPLGLSEALLHPVHTVIY 368


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 31  KYLP*SIYRFLGVFLFNQGKCFIIYSPHCVH 123
           K+ P  +Y ++     + GK F+I S +CVH
Sbjct: 573 KFCPAGVYEYVNDEASSYGKRFVINSQNCVH 603


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 709 SMVERHGPSRTTSRHVTTGRQP*TGDSVRRISGA 608
           S+  +  PS TTS+HV T  +P T    R  S A
Sbjct: 135 SISSKESPSVTTSKHVATITKPSTSSIARMSSNA 168


>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1150

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = +1

Query: 232  LQDPAVLFE---WTLPEA--RCSGLAIQKVLDYRITKKHTCIHNLARIQQP 369
            L DP + +    WT  E   RC  +  Q  LD R T KHT   +  R +QP
Sbjct: 1048 LDDPTLFYNNAAWTSKELYKRCEEIISQMSLDERNTPKHTA--STKRKRQP 1096


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 630 ESPVHGCLPVVTCLEVVRLGPCLSTIDHLLGSDANGAHVTSAYQDTFR 773
           ++P H  + V T   V    P +ST   ++GSDA      S+   T R
Sbjct: 615 QTPTHSSIAVDTLSNVAVDQPAISTPSDVVGSDAGDTSKVSSGTSTPR 662


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 654 PVVTCLEVVRLGPCLSTIDHLLGSDANGAHVTSAY 758
           PV   +E+  +GP  S ID    S  +    TS+Y
Sbjct: 481 PVYLVIELFSIGPSASVIDIRFSSSDDSIKYTSSY 515


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 305 YLTTV*QRNTPAYTTWLGSSNPS 373
           YL     +N  AYT WL SSN S
Sbjct: 317 YLIPGTSKNWEAYTAWLTSSNDS 339


>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 96  HNLFSTLCPQPF 131
           +N F T+CPQPF
Sbjct: 52  YNQFKTICPQPF 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,457,081
Number of Sequences: 5004
Number of extensions: 73358
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)